PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1201220.1 | ||||||||
Common Name | LjTT2b | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29052.1 Da PI: 7.126 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT++Ed++l d+v+++G g W+ ++ g++R++k+c++rw++yl Lj6g3v1201220.1 14 RGVWTAQEDQILRDYVNLHGQGKWRNLPQSAGLKRCGKSCRLRWLNYL 61 899*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.9e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +t+E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ Lj6g3v1201220.1 67 RGNISTDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7899******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.826 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.44E-10 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.467 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.02E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGRSPCCSKK GLNRGVWTAQ EDQILRDYVN LHGQGKWRNL PQSAGLKRCG KSCRLRWLNY 60 LRPGIKRGNI STDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLCKKVQDGV 120 MAGESKTKTP STQEKNLHHD HQKAKAQSIT PSPPKNNMIY TKASKCSKVL LLDPVLPCPS 180 MQMQSDNFIT ELLEEAGAES LLVDHDSAAT KEDGILAFLF DDDEKELSTD ISLLDFDIGE 240 IHLPDLLNSN LWDGCELN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Highly expressed from the very early stages of embryogenesis to the globular stage, decreases rapidly from the late heart-torpedo stage and did not persist after the completion of embryogenesis. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at a high level in immature siliques and at a lower level in flowers. Undetected in young seedlings, roots, leaves and inflorescence stems. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1201220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB300034 | 0.0 | AB300034.2 Lotus japonicus LjTT2b mRNA for R2R3-MYB transcription factor LjTT2b, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541301.1 | 2e-97 | transcription factor MYB23 | ||||
Refseq | XP_028197056.1 | 2e-97 | transcription factor MYB23-like | ||||
Swissprot | Q9FJA2 | 3e-62 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | B1B3F3 | 0.0 | B1B3F3_LOTJA; R2R3-MYB transcription factor LjTT2b | ||||
STRING | GLYMA13G16890.1 | 8e-97 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 5e-63 | MYB family protein |