PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1105040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LSD | ||||||||
Protein Properties | Length: 112aa MW: 12107.2 Da PI: 8.2826 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.1 | 1.2e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGA +V+Ca C+ + Lj6g3v1105040.1 7 CNGCRNILVYPRGAGNVCCAWCNVI 31 **********************986 PP | |||||||
2 | zf-LSD1 | 45.9 | 9.3e-15 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y GA+sVRC++C+t+ Lj6g3v1105040.1 46 CGGCRTLLMYANGATSVRCSCCNTI 70 ***********************97 PP | |||||||
3 | zf-LSD1 | 39.8 | 7.2e-13 | 84 | 107 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt L+YP GA sV+Ca+C+ Lj6g3v1105040.1 84 CGNCRTALMYPHGALSVKCAICHY 107 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.8E-11 | 4 | 32 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.0E-10 | 7 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.4E-15 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.6E-13 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 9.3E-13 | 81 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-12 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MRCQLVCNGC RNILVYPRGA GNVCCAWCNV ITPVPPAGME MSQLYCGGCR TLLMYANGAT 60 SVRCSCCNTI TRVPESNQVS HIHCGNCRTA LMYPHGALSV KCAICHYITN VS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1105040.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT138586 | 0.0 | BT138586.1 Lotus japonicus clone JCVI-FLLj-5N10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004488206.1 | 4e-62 | protein LSD1-like | ||||
Refseq | XP_027189085.1 | 4e-62 | protein LSD1-like | ||||
Swissprot | Q0J7V9 | 6e-45 | LSD1_ORYSJ; Protein LSD1 | ||||
Swissprot | Q93ZB1 | 3e-45 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | I3SDN9 | 2e-75 | I3SDN9_LOTJA; Uncharacterized protein | ||||
STRING | XP_004488206.1 | 1e-61 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4027 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 6e-48 | lsd one like 1 |
Publications ? help Back to Top | |||
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