PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1105040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LSD
Protein Properties Length: 112aa    MW: 12107.2 Da    PI: 8.2826
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1105040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.11.2e-12731125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr++L YPrGA +V+Ca C+ +
  Lj6g3v1105040.1  7 CNGCRNILVYPRGAGNVCCAWCNVI 31
                     **********************986 PP

2zf-LSD145.99.3e-154670125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggCrtlL+Y  GA+sVRC++C+t+
  Lj6g3v1105040.1 46 CGGCRTLLMYANGATSVRCSCCNTI 70
                     ***********************97 PP

3zf-LSD139.87.2e-1384107124
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                      Cg+Crt L+YP GA sV+Ca+C+ 
  Lj6g3v1105040.1  84 CGNCRTALMYPHGALSVKCAICHY 107
                      **********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.8E-11432IPR005735Zinc finger, LSD1-type
PfamPF069433.0E-10730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.4E-154373IPR005735Zinc finger, LSD1-type
PfamPF069436.6E-134670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.3E-1381110IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-1284108IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MRCQLVCNGC RNILVYPRGA GNVCCAWCNV ITPVPPAGME MSQLYCGGCR TLLMYANGAT  60
SVRCSCCNTI TRVPESNQVS HIHCGNCRTA LMYPHGALSV KCAICHYITN VS
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1105040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1385860.0BT138586.1 Lotus japonicus clone JCVI-FLLj-5N10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488206.14e-62protein LSD1-like
RefseqXP_027189085.14e-62protein LSD1-like
SwissprotQ0J7V96e-45LSD1_ORYSJ; Protein LSD1
SwissprotQ93ZB13e-45LOL1_ARATH; Protein LOL1
TrEMBLI3SDN92e-75I3SDN9_LOTJA; Uncharacterized protein
STRINGXP_004488206.11e-61(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.16e-48lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]