PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1038750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 891aa    MW: 100819 Da    PI: 6.642
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1038750.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.32.2e-1764138290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      fY+eYA+++GF  ++   ++s+++g+ + r+fvC++eg +++++++              C+a++++++++++kw+vtk+++eH+H+++
  Lj6g3v1038750.1  64 FYEEYARRMGFCSKIGPCNRSRTDGSNMYREFVCNREGLKKRNNDS--------------CDAMIRIELKSQNKWVVTKFVKEHSHSVV 138
                      ***************************************9998777..............**************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-1464138IPR004330FAR1 DNA binding domain
PfamPF105511.5E-25279370IPR018289MULE transposase domain
PROSITE profilePS5096611.214557593IPR007527Zinc finger, SWIM-type
PfamPF044344.8E-10559591IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-8568595IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MDVQVINVEE GNGHQAKADD GDAEPSDGEI NNAENSGSGS QVEDGISEPF VGMEFDSEVV  60
AKTFYEEYAR RMGFCSKIGP CNRSRTDGSN MYREFVCNRE GLKKRNNDSC DAMIRIELKS  120
QNKWVVTKFV KEHSHSVVSS SKALNLQPRK HFSSVGRTMP ETYQGVGLVP SGVMYVSMDG  180
NRISNQNTRG MLNTHAAAAA EPSHPIKNST SMNYTVRPPF QNRTLGRDAH NLLEYFKKMQ  240
AENPGFFYAI QLDEENRMSN VFWADARSRT AYSHFGDAVH LDTMYRVNQY RVPFAPFTGI  300
NHHGQMVLFG CALLLDDSEA SFLWLFKTFL TAMNDRQPVS IITGQDKAIQ AAVSQVFPQA  360
RHCINKWDVL REGQEKLGHV CLAHPNFQAE LYNCINLTET IEEFESSWNS ILDKYDLRRN  420
DWLQSLYTAR AQWVPSYFRD SFFARVSPNQ GLDVSFFDGY VNQQTTLPLF FRQYERALES  480
WIEKEIEADF ETICTTPVLK TPSPMEKQAA NLYTRKIFSK FQEELVETFV YTANIIEGDG  540
ENSTFRVAKF EDDQKSYSVT LNHSELRANC SCQMFEYSGI LCRHVLTVFT VTNVLTLPSH  600
YILKRWTRNA KSSAGSDERA GESHEQESLS SRYNSLCREA IRYAEEGAVT VETYNAAISC  660
LRDSGKKVTA MKRSVAKVSP NNQVSWAAYD DKKSTSDTTP LLWPRQDEVT RRFNLNDAGG  720
PAQSVADLNL PRMAPVSVHR DDGPSGNTVV LPCLKSMTWV MENKNASPEK RVAVINLKLQ  780
DYSRTPSTES EVKFQLSRVS LEPMLKSMAY ISEQLSIPAN KVAVINLKLE DTERTSGESE  840
VKFQVSRDTL GAMLRSMAYI REQLSSMAYI REQLSTAGNS QSEPQLKKQR K
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1038750.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501994.10.0protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_012571757.10.0protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_027344086.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X3
RefseqXP_027344094.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X3
RefseqXP_027344103.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X3
RefseqXP_027344111.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A371G9L20.0A0A371G9L2_MUCPR; Protein FAR1-RELATED SEQUENCE 3 (Fragment)
STRINGXP_004501994.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]