PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1038750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | FAR1 | ||||||||
Protein Properties | Length: 891aa MW: 100819 Da PI: 6.642 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.3 | 2.2e-17 | 64 | 138 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GF ++ ++s+++g+ + r+fvC++eg +++++++ C+a++++++++++kw+vtk+++eH+H+++ Lj6g3v1038750.1 64 FYEEYARRMGFCSKIGPCNRSRTDGSNMYREFVCNREGLKKRNNDS--------------CDAMIRIELKSQNKWVVTKFVKEHSHSVV 138 ***************************************9998777..............**************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.8E-14 | 64 | 138 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.5E-25 | 279 | 370 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.214 | 557 | 593 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.8E-10 | 559 | 591 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.8E-8 | 568 | 595 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 891 aa Download sequence Send to blast |
MDVQVINVEE GNGHQAKADD GDAEPSDGEI NNAENSGSGS QVEDGISEPF VGMEFDSEVV 60 AKTFYEEYAR RMGFCSKIGP CNRSRTDGSN MYREFVCNRE GLKKRNNDSC DAMIRIELKS 120 QNKWVVTKFV KEHSHSVVSS SKALNLQPRK HFSSVGRTMP ETYQGVGLVP SGVMYVSMDG 180 NRISNQNTRG MLNTHAAAAA EPSHPIKNST SMNYTVRPPF QNRTLGRDAH NLLEYFKKMQ 240 AENPGFFYAI QLDEENRMSN VFWADARSRT AYSHFGDAVH LDTMYRVNQY RVPFAPFTGI 300 NHHGQMVLFG CALLLDDSEA SFLWLFKTFL TAMNDRQPVS IITGQDKAIQ AAVSQVFPQA 360 RHCINKWDVL REGQEKLGHV CLAHPNFQAE LYNCINLTET IEEFESSWNS ILDKYDLRRN 420 DWLQSLYTAR AQWVPSYFRD SFFARVSPNQ GLDVSFFDGY VNQQTTLPLF FRQYERALES 480 WIEKEIEADF ETICTTPVLK TPSPMEKQAA NLYTRKIFSK FQEELVETFV YTANIIEGDG 540 ENSTFRVAKF EDDQKSYSVT LNHSELRANC SCQMFEYSGI LCRHVLTVFT VTNVLTLPSH 600 YILKRWTRNA KSSAGSDERA GESHEQESLS SRYNSLCREA IRYAEEGAVT VETYNAAISC 660 LRDSGKKVTA MKRSVAKVSP NNQVSWAAYD DKKSTSDTTP LLWPRQDEVT RRFNLNDAGG 720 PAQSVADLNL PRMAPVSVHR DDGPSGNTVV LPCLKSMTWV MENKNASPEK RVAVINLKLQ 780 DYSRTPSTES EVKFQLSRVS LEPMLKSMAY ISEQLSIPAN KVAVINLKLE DTERTSGESE 840 VKFQVSRDTL GAMLRSMAYI REQLSSMAYI REQLSTAGNS QSEPQLKKQR K |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1038750.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501994.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like | ||||
Refseq | XP_012571757.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like | ||||
Refseq | XP_027344086.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like isoform X3 | ||||
Refseq | XP_027344094.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like isoform X3 | ||||
Refseq | XP_027344103.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like isoform X3 | ||||
Refseq | XP_027344111.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like isoform X3 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A371G9L2 | 0.0 | A0A371G9L2_MUCPR; Protein FAR1-RELATED SEQUENCE 3 (Fragment) | ||||
STRING | XP_004501994.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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