PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1018460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 165aa MW: 17725.4 Da PI: 6.5161 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.6 | 3.3e-11 | 38 | 63 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kte+C+ + +G C+y ++C+FaHg+ Lj6g3v1018460.1 38 KTEICKAWEDSGNCRYNSKCQFAHGK 63 9***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-14 | 35 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-9 | 35 | 68 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.587 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 38 | 63 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MDDIPMSGGK SGKSSSSSSS GRASSSSSSA PSGKSVIKTE ICKAWEDSGN CRYNSKCQFA 60 HGKEELHPVR SSMKKTKSEL YAAPEYERGV TRSQPASPEP HHTPSSSNNT LNDWSPLDDG 120 IEVLLPGSDK APSREEVDAY INSLRSGPTT KKRLSVFAAL SEEEE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1018460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010423 | 1e-145 | AP010423.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT16M14, TM1779, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027347107.1 | 3e-46 | uncharacterized protein LOC113858602 | ||||
Refseq | XP_027347108.1 | 3e-46 | uncharacterized protein LOC113858602 | ||||
TrEMBL | A0A1S2YH81 | 1e-44 | A0A1S2YH81_CICAR; mRNA decay activator protein ZFP36L2-like | ||||
STRING | XP_004504769.1 | 2e-45 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11780 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 5e-09 | C3H family protein |