PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v0869180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 554aa MW: 61125.9 Da PI: 6.896 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 49 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed l+d+v+++G g+W+++ r g++R++k+c++rw ++l Lj6g3v0869180.1 49 KGPWTTAEDAVLIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHL 96 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.4e-17 | 102 | 145 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE++l+vd+++q+G++ W++ a+ ++ gRt++++k++w++ Lj6g3v0869180.1 102 KGAFSPEEEKLIVDLHAQFGNK-WARMAALLP-GRTDNEIKNYWNT 145 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.941 | 44 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-30 | 46 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-14 | 48 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 49 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-23 | 50 | 103 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.91E-10 | 51 | 96 | No hit | No description |
PROSITE profile | PS51294 | 24.545 | 97 | 151 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-15 | 101 | 149 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-15 | 102 | 145 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-25 | 104 | 150 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.79E-11 | 104 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MEHLTSFNDD ESGFMAMLGG CGETGSGGGS GGGEGSGGGG KGEEMTLKKG PWTTAEDAVL 60 IDYVTKHGEG NWNAVQRNTG LNRCGKSCRL RWANHLRPNL KKGAFSPEEE KLIVDLHAQF 120 GNKWARMAAL LPGRTDNEIK NYWNTRIKRR QRQGLPLYSD DHDRPTTPTT PTTPSSCVTP 180 TGSSHPNTAT KFEFFHQNHH QHHHHHHHQQ QQQQQQHQQQ YHFNHHHPLS PTASHHHHHH 240 SPLSSPLQHR APSYSPHTFL DPAPSALPLS SSAPSLHSFT FQRPAPMLCT PLRFKRYCAS 300 PGSYNSFQVP NSTTPCSSSA LHDVTTNHLD HGFRFPVHQQ NSSNFSQFFH TPLLESAADR 360 GVSSSSPSAF QHKLELPSNQ FSRPSEQDLK LDIHEFNNDP SLQSSSGLLG DILLDAQALA 420 SGQNSKKRSN LSLNEGNDLF DGCQNLEDFP LSSAYWSSTS GQKPKEEAPD LSKFTNEDLS 480 SLLTVTPSST MQQGQDWHNN SAPEASNVQS SGGVMTDDNF GLEIKPIASL FPLSNTTSHN 540 ENQGYTWDNL PGLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 47 | 150 | 5 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v0869180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009827 | 0.0 | AP009827.1 Lotus japonicus genomic DNA, clone: LjT02G13, TM0489a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027341045.1 | 0.0 | transcription factor MYB97 | ||||
TrEMBL | G7IY34 | 0.0 | G7IY34_MEDTR; Myb-like DNA-binding domain protein | ||||
STRING | AES70376 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 3e-65 | myb domain protein 101 |