PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0869180.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 554aa    MW: 61125.9 Da    PI: 6.896
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0869180.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-174996148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt Ed  l+d+v+++G g+W+++ r  g++R++k+c++rw ++l
  Lj6g3v0869180.1 49 KGPWTTAEDAVLIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHL 96
                     79******************************************9986 PP
2Myb_DNA-binding53.17.4e-17102145146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE++l+vd+++q+G++ W++ a+ ++ gRt++++k++w++
  Lj6g3v0869180.1 102 KGAFSPEEEKLIVDLHAQFGNK-WARMAALLP-GRTDNEIKNYWNT 145
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9414496IPR017930Myb domain
SuperFamilySSF466895.24E-3046143IPR009057Homeodomain-like
SMARTSM007179.6E-144898IPR001005SANT/Myb domain
PfamPF002491.4E-144996IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2350103IPR009057Homeodomain-like
CDDcd001672.91E-105196No hitNo description
PROSITE profilePS5129424.54597151IPR017930Myb domain
SMARTSM007171.1E-15101149IPR001005SANT/Myb domain
PfamPF002495.2E-15102145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-25104150IPR009057Homeodomain-like
CDDcd001671.79E-11104145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MEHLTSFNDD ESGFMAMLGG CGETGSGGGS GGGEGSGGGG KGEEMTLKKG PWTTAEDAVL  60
IDYVTKHGEG NWNAVQRNTG LNRCGKSCRL RWANHLRPNL KKGAFSPEEE KLIVDLHAQF  120
GNKWARMAAL LPGRTDNEIK NYWNTRIKRR QRQGLPLYSD DHDRPTTPTT PTTPSSCVTP  180
TGSSHPNTAT KFEFFHQNHH QHHHHHHHQQ QQQQQQHQQQ YHFNHHHPLS PTASHHHHHH  240
SPLSSPLQHR APSYSPHTFL DPAPSALPLS SSAPSLHSFT FQRPAPMLCT PLRFKRYCAS  300
PGSYNSFQVP NSTTPCSSSA LHDVTTNHLD HGFRFPVHQQ NSSNFSQFFH TPLLESAADR  360
GVSSSSPSAF QHKLELPSNQ FSRPSEQDLK LDIHEFNNDP SLQSSSGLLG DILLDAQALA  420
SGQNSKKRSN LSLNEGNDLF DGCQNLEDFP LSSAYWSSTS GQKPKEEAPD LSKFTNEDLS  480
SLLTVTPSST MQQGQDWHNN SAPEASNVQS SGGVMTDDNF GLEIKPIASL FPLSNTTSHN  540
ENQGYTWDNL PGLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29471505107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0869180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098270.0AP009827.1 Lotus japonicus genomic DNA, clone: LjT02G13, TM0489a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341045.10.0transcription factor MYB97
TrEMBLG7IY340.0G7IY34_MEDTR; Myb-like DNA-binding domain protein
STRINGAES703760.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.23e-65myb domain protein 101