PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v0854530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 401aa MW: 43844.5 Da PI: 6.3758 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.6 | 1.5e-29 | 214 | 272 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt Cpv+k+v+r+aed +v+++tYeg+Hnh+ Lj6g3v0854530.1 214 PDGCQWRKYGQKMAKGNPCPRAYYRCTIGtACPVRKQVQRCAEDRSVLVTTYEGQHNHQ 272 59**************************98****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-32 | 198 | 274 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-27 | 206 | 274 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.415 | 208 | 274 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-34 | 213 | 273 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-25 | 215 | 272 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MDQVTSNVDD AVAHSSQVMS FNGKRLIMDE MDFFAEKKSS PVISDQMVHQ MELHVDTSLD 60 LLTKISPSNR LTVEDEALEA KDDKRNEYEA LLAELHHLNA ENQRLRELVD QVNNDYSALY 120 KHIMKLMQKQ QTNDEGKRDG VIPRPFLDIV GFAEKEHEPS QKIAGTSGDI VQLDTNEIKK 180 LSSARDVDQT SETVSMIKKA RVSVRARSES SMIPDGCQWR KYGQKMAKGN PCPRAYYRCT 240 IGTACPVRKQ VQRCAEDRSV LVTTYEGQHN HQLPPTAKAM ASTTSAAASM LLSGAMPSAD 300 GIINPTILES ASLSCSQNVA TLSASAPFPT ITLDLTQSST SSSQLQGSLQ SQLNLLPPLL 360 AQKFMSAPNT FGHKLHHLQG IETSSSLADT VNAAAVAITA A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-22 | 204 | 274 | 8 | 77 | Probable WRKY transcription factor 4 |
2ayd_A | 2e-22 | 200 | 275 | 1 | 75 | WRKY transcription factor 1 |
2lex_A | 2e-22 | 204 | 274 | 8 | 77 | Probable WRKY transcription factor 4 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v0854530.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013459851.1 | 1e-157 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 2e-85 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A072UWD7 | 1e-155 | A0A072UWD7_MEDTR; Putative transcription factor WRKY family | ||||
STRING | GLYMA08G43258.1 | 1e-155 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13913 | 12 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 7e-60 | WRKY family protein |