PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v0831440.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 495aa MW: 55555.7 Da PI: 5.2946 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19 | 2.5e-06 | 148 | 167 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ff++ + C++G++C+ +Hg Lj6g3v0831440.2 148 CKFFLQ-HRCRFGANCRQSHG 167 ******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.601 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00443 | 2.0E-12 | 293 | 339 | IPR000467 | G-patch domain |
PROSITE profile | PS50174 | 12.647 | 295 | 351 | IPR000467 | G-patch domain |
Pfam | PF01585 | 2.1E-11 | 295 | 337 | IPR000467 | G-patch domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MGSSEERVLL EEQLELQLQE QRDSLSAIDE ALLSDPTNSE LVAVHEELVQ AIKDAEEGLL 60 HLKRARLLQE VDSVLHNTNM FTEEEKVEPL DPTDVEPEPL EEKSYSIGSK CRFRHKDGRW 120 YNGQVVQLDN SVAKISFLTP TSENMLMCKF FLQHRCRFGA NCRQSHGVDV QLSSLKRYVP 180 TIWKPSLVGS SIWALSDAKT GIWREAELEL WDEKAGVGQV VFRDSGSSMK LCAEEIVLSE 240 YAEVSDLESD SSLEQSESSD YDEEESQGLG FLESTNLQKG IQTDTALFAK WENHTRGIAS 300 KMMANMGFRE GMGLGVTGQG MLDPIPVKVL PPKQSLDHAL DSRKGEENNE KQGKKRSRGG 360 KRKREKKFAE ANRTAKEEEE SAPDVFTLIN NQLAMHGEAS NGGSMKKQQS KDSGEVKKVD 420 RKVLVAYEDE VKGLKMRVAK LEQMVNANKK EKAVYEAAMR KLVETRKALA EAESVHASAS 480 NTVVGKEKEK RWLKF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 352 | 358 | GKKRSRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v0831440.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027341542.1 | 0.0 | zinc finger CCCH domain-containing protein 18 | ||||
Swissprot | Q6K687 | 0.0 | C3H18_ORYSJ; Zinc finger CCCH domain-containing protein 18 | ||||
TrEMBL | A0A0B2PY90 | 0.0 | A0A0B2PY90_GLYSO; Zinc finger CCCH domain-containing protein 18 | ||||
TrEMBL | I1N0J9 | 0.0 | I1N0J9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G10210.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10129 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24830.1 | 1e-163 | C3H family protein |
Publications ? help Back to Top | |||
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