PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v0802160.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 399aa MW: 44292.9 Da PI: 7.4764 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.7 | 4.4e-32 | 48 | 105 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk ers+ d+k++ei+Y+g+H+h+k Lj6g3v0802160.3 48 DDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGKITEIIYKGTHDHPK 105 8****************************************.***************85 PP | |||||||
2 | WRKY | 107 | 9.8e-34 | 222 | 280 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ Lj6g3v0802160.3 222 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 280 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.938 | 42 | 106 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.5E-27 | 45 | 106 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-25 | 46 | 106 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-34 | 47 | 105 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-24 | 48 | 104 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.5E-38 | 207 | 282 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-29 | 214 | 282 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.825 | 217 | 282 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 222 | 281 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-26 | 223 | 280 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MVSSGASTHV EVNSHELNPR GNIATGPQAS QIEGGAGGLP VAADRASDDG YNWRKYGQKL 60 VKGSEFPRSY YKCTHPNCEV KKLFERSHDG KITEIIYKGT HDHPKPPPNR RYSTGTIISM 120 PEERYDKAYL TSRDDKGFNN YGQVSHTAEP DSTPELSPSA TNDDSVEGIG FLSNRNNDEV 180 DDDDPFLKRR KMDLGNIDIT PVVKPIREPR VVVQTLSEVD ILDDGYRWRK YGQKVVRGNP 240 NPRSYYKCTN AGCPVRKHVE RASHDPKAVI TTYEGKHNHD VPIARNSCHD HMAGQATAQT 300 RIRAEESDTI SLDLGMGISQ AAENRSNNQG RMVLSEFGDS QTHTSNSNFK FVHTAPASVY 360 LGVLNNNNSH PYGSKENPSD RNHSAYPCPQ NMGRILMGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-37 | 48 | 282 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-37 | 48 | 282 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.20063 | 0.0 | floral bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v0802160.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027343728.1 | 0.0 | probable WRKY transcription factor 20 isoform X1 | ||||
Refseq | XP_027343729.1 | 0.0 | probable WRKY transcription factor 20 isoform X2 | ||||
Refseq | XP_027343730.1 | 0.0 | probable WRKY transcription factor 20 isoform X3 | ||||
Refseq | XP_027343731.1 | 0.0 | probable WRKY transcription factor 20 isoform X4 | ||||
Swissprot | Q93WV0 | 1e-142 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A0R0IVV5 | 0.0 | A0A0R0IVV5_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445JN63 | 0.0 | A0A445JN63_GLYSO; Putative WRKY transcription factor 20 isoform C | ||||
STRING | GLYMA08G43770.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 1e-145 | WRKY family protein |