PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0802160.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 399aa    MW: 44292.9 Da    PI: 7.4764
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0802160.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.4e-3248105260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers+ d+k++ei+Y+g+H+h+k
  Lj6g3v0802160.3  48 DDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGKITEIIYKGTHDHPK 105
                      8****************************************.***************85 PP

2WRKY1079.8e-34222280159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Lj6g3v0802160.3 222 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 280
                      59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.93842106IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-2745106IPR003657WRKY domain
SuperFamilySSF1182906.02E-2546106IPR003657WRKY domain
SMARTSM007743.4E-3447105IPR003657WRKY domain
PfamPF031061.0E-2448104IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.5E-38207282IPR003657WRKY domain
SuperFamilySSF1182901.44E-29214282IPR003657WRKY domain
PROSITE profilePS5081138.825217282IPR003657WRKY domain
SMARTSM007743.1E-39222281IPR003657WRKY domain
PfamPF031062.1E-26223280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MVSSGASTHV EVNSHELNPR GNIATGPQAS QIEGGAGGLP VAADRASDDG YNWRKYGQKL  60
VKGSEFPRSY YKCTHPNCEV KKLFERSHDG KITEIIYKGT HDHPKPPPNR RYSTGTIISM  120
PEERYDKAYL TSRDDKGFNN YGQVSHTAEP DSTPELSPSA TNDDSVEGIG FLSNRNNDEV  180
DDDDPFLKRR KMDLGNIDIT PVVKPIREPR VVVQTLSEVD ILDDGYRWRK YGQKVVRGNP  240
NPRSYYKCTN AGCPVRKHVE RASHDPKAVI TTYEGKHNHD VPIARNSCHD HMAGQATAQT  300
RIRAEESDTI SLDLGMGISQ AAENRSNNQG RMVLSEFGDS QTHTSNSNFK FVHTAPASVY  360
LGVLNNNNSH PYGSKENPSD RNHSAYPCPQ NMGRILMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-3748282877Probable WRKY transcription factor 4
2lex_A3e-3748282877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.200630.0floral bud
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0802160.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027343728.10.0probable WRKY transcription factor 20 isoform X1
RefseqXP_027343729.10.0probable WRKY transcription factor 20 isoform X2
RefseqXP_027343730.10.0probable WRKY transcription factor 20 isoform X3
RefseqXP_027343731.10.0probable WRKY transcription factor 20 isoform X4
SwissprotQ93WV01e-142WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0R0IVV50.0A0A0R0IVV5_SOYBN; Uncharacterized protein
TrEMBLA0A445JN630.0A0A445JN63_GLYSO; Putative WRKY transcription factor 20 isoform C
STRINGGLYMA08G43770.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-145WRKY family protein