PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v0802160.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 546aa MW: 59637.1 Da PI: 7.2173 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101 | 6.9e-32 | 195 | 252 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk ers+ d+k++ei+Y+g+H+h+k Lj6g3v0802160.2 195 DDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGKITEIIYKGTHDHPK 252 8****************************************.***************85 PP | |||||||
2 | WRKY | 106.3 | 1.5e-33 | 369 | 427 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ Lj6g3v0802160.2 369 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 427 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.938 | 189 | 253 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.7E-27 | 192 | 253 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.68E-25 | 193 | 253 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-34 | 194 | 252 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-24 | 195 | 251 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-37 | 354 | 429 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-29 | 361 | 429 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.825 | 364 | 429 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 369 | 428 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-26 | 370 | 427 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MDAGEAHSDL RRNGDDPTRP DSRSDSATDG AAATGGARYK LMMPAKLPIS RSPCVTIPPG 60 LSPSSFLESP VLLSNMKVEP SPTTGSLPRL QQTAHGFVIS AAFPVATVPA DFEDHVSDKS 120 TQNGQVKAVK SEIAVPSNEV GRSSPVHMVS SGASTHVEVN SHELNPRGNI ATGPQASQIE 180 GGAGGLPVAA DRASDDGYNW RKYGQKLVKG SEFPRSYYKC THPNCEVKKL FERSHDGKIT 240 EIIYKGTHDH PKPPPNRRYS TGTIISMPEE RYDKAYLTSR DDKGFNNYGQ VSHTAEPDST 300 PELSPSATND DSVEGIGFLS NRNNDEVDDD DPFLKRRKMD LGNIDITPVV KPIREPRVVV 360 QTLSEVDILD DGYRWRKYGQ KVVRGNPNPR SYYKCTNAGC PVRKHVERAS HDPKAVITTY 420 EGKHNHDVPI ARNSCHDHMA GQATAQTRIR AEESDTISLD LGMGISQAAE NRSNNQGRMV 480 LSEFGDSQTH TSNSNFKFVH TAPASVYLGV LNNNNSHPYG SKENPSDRNH SAYPCPQNMG 540 RILMGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 195 | 429 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 195 | 429 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.20063 | 0.0 | floral bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v0802160.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009789 | 0.0 | AP009789.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT11E14, TM2023, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027343728.1 | 0.0 | probable WRKY transcription factor 20 isoform X1 | ||||
Swissprot | Q93WV0 | 1e-164 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A151S523 | 0.0 | A0A151S523_CAJCA; Putative WRKY transcription factor 20 | ||||
STRING | GLYMA18G09040.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 1e-165 | WRKY family protein |