PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0802140.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 546aa    MW: 61704.4 Da    PI: 4.8697
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0802140.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.69.1e-1341775462374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      +e L++cA+a++ +d+e ++ l+++l++++s +g+p+qRl ay++eAL ar+a+s+s++yk+l+++  +     e l+++++++e++P++kf++
  Lj6g3v0802140.1 177 KEILYACAKAMAGNDMEITECLVSELRKMVSISGNPIQRLGAYMLEALVARMASSGSTIYKSLKCTVPT---GNELLSYMNVLYEICPYFKFGY 267
                      789*****************************************************************9...99******************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      + aN aI ea+++e++vHiiDf+isqG+QW++L+qaLa Rp+gpp++RiTgv++  s+  +   l  +gerL+ +A++++vpfef++ v  +  
  Lj6g3v0802140.1 268 MSANGAIAEAMKEEREVHIIDFQISQGTQWVSLIQALAHRPGGPPKVRITGVDDTFSSyaRGGGLDIVGERLSTLAQSCHVPFEFHA-VRATAP 360
                      ******************************************************776688999************************.7999** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      +l+le+++++p Ea+aVn++++lh+++desvs++++rd++Lkl k lsPkvv++veqe ++n+++Fl+rf+e+++yy a+f+s+++ lpre++e
  Lj6g3v0802140.1 361 ELQLEDFDLRPYEAVAVNFAIMLHHVPDESVSSHNHRDRLLKLAKCLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYQAVFESIDVVLPREHKE 454
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ri+vE+++l+re+vn+vacegaer+erhe l+kWr+r+ +aGF+p+pl++++++++k ll+ + ++ y++ee++g+l+lgW+++ Lv+ +aWr
  Lj6g3v0802140.1 455 RINVEQHCLAREVVNLVACEGAERVERHELLNKWRMRFASAGFTPYPLNSYINSSIKDLLESYRGH-YTLEERDGALFLGWMNQVLVASCAWR 546
                      ****************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.625150527IPR005202Transcription factor GRAS
PfamPF035143.1E-131177546IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQTSQKHEIS YGSGRFYVEP VQNLESYCLP SSENLDNYSS SDNSTQITYP SVQTLEQYCT  60
HESASTSNSF PYQNSPSNVS FSSDNSPVSK QESNSYVFRP QQSVEIFNGA PEDDYYSAQD  120
FDDLRHKIRE LETAMLGPNT DMLDTYDAVI AEESASFLLA EEKWNKMMEI KSRGDLKEIL  180
YACAKAMAGN DMEITECLVS ELRKMVSISG NPIQRLGAYM LEALVARMAS SGSTIYKSLK  240
CTVPTGNELL SYMNVLYEIC PYFKFGYMSA NGAIAEAMKE EREVHIIDFQ ISQGTQWVSL  300
IQALAHRPGG PPKVRITGVD DTFSSYARGG GLDIVGERLS TLAQSCHVPF EFHAVRATAP  360
ELQLEDFDLR PYEAVAVNFA IMLHHVPDES VSSHNHRDRL LKLAKCLSPK VVTLVEQEFN  420
TNNAPFLQRF VETMNYYQAV FESIDVVLPR EHKERINVEQ HCLAREVVNL VACEGAERVE  480
RHELLNKWRM RFASAGFTPY PLNSYINSSI KDLLESYRGH YTLEERDGAL FLGWMNQVLV  540
ASCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-631805468375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.62640.0floral bud| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0802140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097890.0AP009789.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT11E14, TM2023, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232754.10.0scarecrow-like protein 21
RefseqXP_020232755.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A151S4X10.0A0A151S4X1_CAJCA; Scarecrow-like protein 5
STRINGXP_004506678.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]