PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj6g3v0753150.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NF-YB

Protein Properties

Length: 47aa MW: 5359.89 Da PI: 4.3701

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj6g3v0753150.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	36.6	1.1e-11	1	27	71	97
NF-YB 71 latlGfedyveplkvylkkyrelegek 97 ++tlGfedyveplkvyl+++re+egek Lj6g3v0753150.1 1 MTTLGFEDYVEPLKVYLQRFREMEGEK 27 89***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.6E-5	1	42	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.9E-9	1	37	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 47 aa Download sequence Send to blast
MTTLGFEDYV EPLKVYLQRF REMEGEKSVA ARDRDAPSSN ASNSSFE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.8412	1e-75	cell culture\| floral bud\| flower\| pod\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj6g3v0753150.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017435120.1	6e-22	PREDICTED: nuclear transcription factor Y subunit B-3-like
Refseq	XP_027930250.1	5e-22	nuclear transcription factor Y subunit B-3-like
TrEMBL	A0A0L9VBC0	1e-20	A0A0L9VBC0_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3S6N1	1e-20	A0A0S3S6N1_PHAAN; Uncharacterized protein
TrEMBL	A0A4D6KKW9	1e-20	A0A4D6KKW9_VIGUN; Nuclear transcription factor Y
STRING	GLYMA18G08620.1	1e-19	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	1e-14	nuclear factor Y, subunit B3