PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0607190.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 299aa    MW: 33853.1 Da    PI: 9.4752
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0607190.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.3e-083276345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E +l+ +a + + ++   +W ++a++++ g+t  +++  + 
  Lj6g3v0607190.1 32 KWTPAENKLFENALAVYDKDtpdRWYRVAEMIP-GKTVVDVIKQYK 76
                     8********************************.******998886 PP
2Myb_DNA-binding44.73.1e-14139183347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Lj6g3v0607190.1 139 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 183
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.7212883IPR017884SANT domain
SMARTSM007173.6E-82981IPR001005SANT/Myb domain
SuperFamilySSF466893.89E-113185IPR009057Homeodomain-like
CDDcd001673.67E-73278No hitNo description
PfamPF002491.3E-63277IPR001005SANT/Myb domain
PROSITE profilePS5129420.486132188IPR017930Myb domain
SuperFamilySSF466898.22E-17134187IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17135187IPR006447Myb domain, plants
SMARTSM007175.3E-13136186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-12136183IPR009057Homeodomain-like
CDDcd001673.18E-11139184No hitNo description
PfamPF002491.1E-12139183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKWEMEILPP APYIHNPNNS TNWLLEDNRN TKWTPAENKL FENALAVYDK DTPDRWYRVA  60
EMIPGKTVVD VIKQYKELEV DVCNIEAGLV PIPGYSSTTS PFTLDWVNTP PGYDGFKGLT  120
AKRSSSGRLP DQERKKGVPW TEEEHKLFLL GLKKYGKGDW RNISRNFVIT RTPTQVASHA  180
QKYFIRQLSG GKDKRRASIH DITTVNLTET TRTTPNSEDS KRSTSPQNSA MLSGLRGPDS  240
ASAGLHFQWN NTQPNAVPTI APNPVHEQQF MSPYGLNSYG FKMPGQNYYL GPQTQNMVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-16331051183RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0607190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1494200.0BT149420.1 Lotus japonicus clone JCVI-FLLj-5M3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027334971.11e-176transcription factor DIVARICATA-like
SwissprotQ8S9H71e-115DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A151U9Y91e-171A0A151U9Y9_CAJCA; Myb-like protein J
STRINGGLYMA18G07250.11e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.19e-86MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]