PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0528550.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CAMTA
Protein Properties Length: 1106aa    MW: 125104 Da    PI: 5.7493
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0528550.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.13.8e-54211363118
             CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                      + ++rwl++ ei++iL n++++++++e++  p+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+e +++fqr
  Lj6g3v0528550.1  21 EAQHRWLRPAEICEILSNYRNFRIASEPAYMPPSGSLFLFDRKVMRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEGHENFQR 114
                      669******************************************************************************************* PP

             CG-1  97 rcywlLeeelekivlvhylevk 118
                      r+yw+Leeel++iv+vhy++vk
  Lj6g3v0528550.1 115 RTYWMLEEELSHIVFVHYRDVK 136
                      *******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.69515141IPR005559CG-1 DNA-binding domain
SMARTSM010769.4E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038595.5E-4821135IPR005559CG-1 DNA-binding domain
PfamPF018331.1E-6521597IPR002909IPT domain
SuperFamilySSF812963.11E-17521606IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.101.2E-5521595IPR013783Immunoglobulin-like fold
PROSITE profilePS5029717.024706817IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.64E-17712817IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.8E-17714821IPR020683Ankyrin repeat-containing domain
CDDcd002049.79E-13717815No hitNo description
PfamPF127963.6E-6728818IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.656756788IPR002110Ankyrin repeat
SMARTSM002480.038756785IPR002110Ankyrin repeat
SMARTSM002481400795824IPR002110Ankyrin repeat
SuperFamilySSF525407.43E-7925980IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.26930952IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.133931960IPR000048IQ motif, EF-hand binding site
PfamPF006120.0078933951IPR000048IQ motif, EF-hand binding site
SMARTSM000150.069953975IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.041954978IPR000048IQ motif, EF-hand binding site
PfamPF006127.1E-4956974IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MAETTRYVPP NQLDIEQIIL EAQHRWLRPA EICEILSNYR NFRIASEPAY MPPSGSLFLF  60
DRKVMRYFRK DGHNWRKKKD GKTVREAHER LKAGSVDVLH CYYAHGEGHE NFQRRTYWML  120
EEELSHIVFV HYRDVKGTKA NYRWAKENEE SLPSQQTYKI MPNTETEVKT SISSTLHPRG  180
YQVPSQTVDT SMNSAQTSEY EEAESAFNNH ANSEFYSFLE LQHPVVENSK AQIADSYCPL  240
PLKDDRAKFP VIPGVNYTSL GQANKIKDIH NVGLTYEPSK SLGFSSWEDI LGNNGGSHHV  300
PFQPSFSETQ SNDKGINRDP SQAYEIMGQH FTISIDEQHG NGSPITPEGS WQASEFNSLS  360
MSNSPIDGLY SGSTCEVIYS NCAQEVYEVD FQKSMEQCLL HPYKQNKFLM QNDPQENSLK  420
EKDSLNSDIE ANRSLDGIED TSLSLKTNLL DGTQEGLKKL DSFNQWMSKE LGDVEESNKQ  480
STSDAYWDAV ESENGVDSTT IPSLDTYVLD PSVSHDQLFS IIDYSPSWTF EGSETMVLIS  540
GQFLRSQHEA EQCKWSCMFG EKEVPAEIIE NGVLCCHTPP HKAGRVPFYV TCSNRLACSE  600
VREFDFRVNY SPEINTAGEN RGSIVDIYNI RFGELLSLEH ALPSSSDSQS ISEKSELRNE  660
ISSLLRREDD DWDKLLKLTL EIDFSPEILQ EQLLQNLLKD KLLAWLLHKI TDDGKGPNVL  720
DGGGQGVLHF AAALGYDWAL EPTVVAGVNV NFRDVHGWTA LHWAAFCGRE RTVASLISLG  780
AAPVALTDPC LAYPSGRTPA DLASANGHKG IAGFLAQSFL HAQLSSLDLN RNMGETSAAK  840
VFHRIQEQNT AQVNHYEGLS YELSLKDSLA AVCNATQAAA RIHQVFRVQS FQRKQLKEHG  900
EDRFGISDEQ ALSLVTKNVK PHKSGQRNEP AHVAATRIQN KFRGWKGRKE FLLIRQRIVK  960
IQAHVRGHQV RKNHGKIIWS VGILEKVVLR WRRKGCGLRG FKSEGVSEGN MVQGESSTED  1020
EYDLLKEGRK QTEQRLQIAL ARVKSMVQYP EARDQYHRLL NVVTEIQENQ VKHERTSNNS  1080
EETREFDNLI DLEALLDEDI FMPTAT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.204150.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0528550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524262.10.0calmodulin-binding transcription activator 1-like isoform X2
TrEMBLI1K4J10.0I1K4J1_SOYBN; Uncharacterized protein
STRINGGLYMA05G31190.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82842735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1