PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0521560.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-X1
Protein Properties Length: 868aa    MW: 97016 Da    PI: 8.4138
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0521560.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.93.7e-07236254119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG H+C + CH+GpCppC+
  Lj6g3v0521560.1 236 CGVHRCVEVCHRGPCPPCR 254
                      ******************7 PP
2zf-NF-X1171.3e-05396413118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H C++ C+ G+CppC
  Lj6g3v0521560.1 396 CGRHACKRRCCDGDCPPC 413
                      ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578506.29E-568149No hitNo description
PROSITE profilePS500898.56571138IPR001841Zinc finger, RING-type
PROSITE patternPS01359071137IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.33E-6172220No hitNo description
PfamPF014220.07184201IPR000967Zinc finger, NF-X1-type
SMARTSM004380.02184202IPR000967Zinc finger, NF-X1-type
SMARTSM00438180210232IPR000967Zinc finger, NF-X1-type
CDDcd060087.18E-8226274No hitNo description
PfamPF014222.5E-5236254IPR000967Zinc finger, NF-X1-type
SMARTSM004381.0E-4236255IPR000967Zinc finger, NF-X1-type
CDDcd060082.33E-9279326No hitNo description
PfamPF014220.03289307IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0011289308IPR000967Zinc finger, NF-X1-type
CDDcd060083.17E-8333382No hitNo description
PfamPF014220.0066343362IPR000967Zinc finger, NF-X1-type
SMARTSM004380.32343363IPR000967Zinc finger, NF-X1-type
CDDcd060082.00E-7386434No hitNo description
PfamPF014220.0012396413IPR000967Zinc finger, NF-X1-type
SMARTSM004380.014396415IPR000967Zinc finger, NF-X1-type
CDDcd060087.64E-10413461No hitNo description
PfamPF014220.031417441IPR000967Zinc finger, NF-X1-type
SMARTSM004380.14423442IPR000967Zinc finger, NF-X1-type
SMARTSM0043845480501IPR000967Zinc finger, NF-X1-type
PfamPF014224.7490500IPR000967Zinc finger, NF-X1-type
PfamPF01422170509518IPR000967Zinc finger, NF-X1-type
SMARTSM0043887509554IPR000967Zinc finger, NF-X1-type
PfamPF014220.15591601IPR000967Zinc finger, NF-X1-type
SMARTSM004386.5591623IPR000967Zinc finger, NF-X1-type
SMARTSM004380.067633651IPR000967Zinc finger, NF-X1-type
PfamPF014222.1635650IPR000967Zinc finger, NF-X1-type
SMARTSM0043839696718IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MTSSPPQPLS DSDSDGGGPS TSQALRHTDL SDSIFKSYFD FSGHSSTTAT TADLSKIRSF  60
LTSSSSGALS CLICLERIKP SDPTWSCTSL CYAVFHLFCI QSWARQASDL SALRAATRLP  120
ISADQASQSA LWNCPKCRGE FSKTQIPKTY LCFCGKLENP PSDDPWVLPH SCGDVCQRPL  180
KHNCGHHCLL LCHPGPCPSC PQLVKARCFC GSHQDVRRCG FKEFSCENPC SKLFDCGVHR  240
CVEVCHRGPC PPCRIRAVCS CQCRKVREER ECCDRVFRCG EPCEKKLTCG KHVCEKGCHS  300
GECGECPLQG KRTCPCGKRV YEGMPCDSPV QVCGATCEKM LPCGYHRCPE RCHRGQCVEN  360
CRIVVRKSCR CGSLKKDVPC YQDLTCDRKC QTMRDCGRHA CKRRCCDGDC PPCAEICGRR  420
LRCKSHKCPS PCHRGACAPC PIMVTISCAC GETHFEVPCG TEMDQKPPKC PKRCPITPLC  480
RHALNVKPHK CHYGACPPCR LPCGEEYQCG HACKLRCHGA KPPPTPEFTL KPKKKKIIQQ  540
SESIPGTPCP PCPELVWRPC VGQHIGAERM MVCSHKSQFS CENLCGNPLR CGNHYCTKTC  600
HALENKSSMN QLLRGEPCED CSLSCQKERE PTCPHHCPRR CHPGDCPPCK VLIKRSCHCG  660
AMVHVFECIY YNSLSAKDQV SVRSCGGPCH RKLPNCTHLC PETCHPGQCP NPEKCCKKVT  720
VRCKCHTLKK EWLCQDVQAA YHRAGCNPMD IPKNQFGIGL IPCNSDCKSK VQIVESELQL  780
RKSRVTEVKE PDNEKPVPKR RKRRDRVIEP KETTKLQKII SRTKQLLLLI FILVILVAAA  840
YYGYKGLLRL NDWMNEVDEK RQRYSRIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1797803PKRRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.155200.0pod| protoplast
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0521560.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500492.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A1S2Y8E70.0A0A1S2Y8E7_CICAR; NF-X1-type zinc finger protein NFXL2
STRINGXP_004500492.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors