PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v0484100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 179aa MW: 20164 Da PI: 6.7679 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.2 | 3.2e-39 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+l+r+C+++C++apyf ++++kkf vhk+FGasnv+k+l ++pee+red+++sl+yeAe r++dPvyG++g i lq+++ +l+++l Lj6g3v0484100.1 11 SCAACKLLKRRCTPNCIFAPYFRSDERKKFTKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEERLKDPVYGCIGSIALLQRKMVELQHDL 104 6********************************************************************************************* PP DUF260 95 allkee 100 a +k++ Lj6g3v0484100.1 105 AIAKDR 110 999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.953 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-38 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MKGYEPRSSS SCAACKLLKR RCTPNCIFAP YFRSDERKKF TKVHKVFGAS NVSKILIEVP 60 EEQREDTVNS LAYEAEERLK DPVYGCIGSI ALLQRKMVEL QHDLAIAKDR LARVHAAAAT 120 STMLSSADIL HAHVSLPPFP DFPTCNDFND DMFCQSSSSS QSFGRHEMVD DFSEIPYMF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-43 | 6 | 113 | 6 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-43 | 6 | 113 | 6 | 113 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v0484100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417048.1 | 1e-104 | PREDICTED: LOB domain-containing protein 21-like | ||||
Swissprot | Q9SRL8 | 2e-63 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A0L9UAM8 | 1e-102 | A0A0L9UAM8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007163564.1 | 1e-101 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5944 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 3e-64 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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