PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj6g3v0467050.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 124aa MW: 14000.7 Da PI: 4.122

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj6g3v0467050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	60.1	6e-19	7	64	43	100
DUF260 43 lkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 + +l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la++++e Lj6g3v0467050.1 7 STMLQELPFDQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAE 64 679***************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.525	1	65	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-17	7	62	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MVIDQNSTML QELPFDQRAD AVSSLVYEAH ARVRDPVYGC VGAISYLQNQ VSELQMQLAV 60 AQAEILCIQM QNEPVMPNPE LDLDQKSYLL QNDLPQYLNY TSSSNVIHHD SLSRESIFGH 120 DMVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-19	7	66	53	112	LOB family transfactor Ramosa2.1
5ly0_B	8e-19	7	66	53	112	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj6g3v0467050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020228899.1	7e-68	LOB domain-containing protein 12
Swissprot	Q8LBW3	3e-38	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A151SP04	2e-66	A0A151SP04_CAJCA; LOB domain-containing protein 12
STRING	GLYMA18G02780.1	8e-66	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-40	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]