PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj6g3v0392190.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NAC

Protein Properties

Length: 500aa MW: 56969 Da PI: 4.6173

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj6g3v0392190.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.8	8.3e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v Lj6g3v0392190.1 6 LPPGFRFHPTDEELVSYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKV 98 79**************************.99***********6434445667******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s +++++g+kktLv+y+grap+g++t Wvmheyrl Lj6g3v0392190.1 99 HS-QSRAIGMKKTLVYYRGRAPHGSRTGWVMHEYRL 133 .999****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-64	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	62.015	6	158	IPR003441	NAC domain
Pfam	PF02365	8.9E-31	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV SYYLKRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPGK 60 DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVHS QSRAIGMKKT LVYYRGRAPH 120 GSRTGWVMHE YRLDERECET ATASGLQDAY ALCRVFKKST VIAPKVGEQY VNVTRHANQM 180 TSEQSSSIEL YSEGRGEVLE STNYLMPWDT CSTQNVNGAP ASYSSFPNSG TRDNGMWSQF 240 SSDDLLNLPT SSSSFPNYGA IPYPPSKVDI ALECARMQHR FTMPPLEVED FPQVGNSELK 300 MMTQASGSMS GSKRETDILQ EILSVAHVSQ ELINQSSYSQ ALWGSNSDNY APHENDFTFM 360 VDTNNYNHMN DMNSLRYVDK AWEDPNARSI DIIGDLHDDF KADQRMVENL RWVGMSSKDF 420 EKSFMEEQKV VPIEDISSFQ TIREENEVQA ESEQQNSNKE LNDTDIDNFS LEFINDDDPN 480 VNFIDDGNID YSNSSSFEVV

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV SYYLKRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPGK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVHS QSRAIGMKKT LVYYRGRAPH  120
GSRTGWVMHE YRLDERECET ATASGLQDAY ALCRVFKKST VIAPKVGEQY VNVTRHANQM  180
TSEQSSSIEL YSEGRGEVLE STNYLMPWDT CSTQNVNGAP ASYSSFPNSG TRDNGMWSQF  240
SSDDLLNLPT SSSSFPNYGA IPYPPSKVDI ALECARMQHR FTMPPLEVED FPQVGNSELK  300
MMTQASGSMS GSKRETDILQ EILSVAHVSQ ELINQSSYSQ ALWGSNSDNY APHENDFTFM  360
VDTNNYNHMN DMNSLRYVDK AWEDPNARSI DIIGDLHDDF KADQRMVENL RWVGMSSKDF  420
EKSFMEEQKV VPIEDISSFQ TIREENEVQA ESEQQNSNKE LNDTDIDNFS LEFINDDDPN  480
VNFIDDGNID YSNSSSFEVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-55	1	160	12	167	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-55	1	160	12	167	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-55	1	160	12	167	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-55	1	160	12	167	NO APICAL MERISTEM PROTEIN
3swm_A	3e-55	1	160	15	170	NAC domain-containing protein 19
3swm_B	3e-55	1	160	15	170	NAC domain-containing protein 19
3swm_C	3e-55	1	160	15	170	NAC domain-containing protein 19
3swm_D	3e-55	1	160	15	170	NAC domain-containing protein 19
3swp_A	3e-55	1	160	15	170	NAC domain-containing protein 19
3swp_B	3e-55	1	160	15	170	NAC domain-containing protein 19
3swp_C	3e-55	1	160	15	170	NAC domain-containing protein 19
3swp_D	3e-55	1	160	15	170	NAC domain-containing protein 19
4dul_A	3e-55	1	160	12	167	NAC domain-containing protein 19
4dul_B	3e-55	1	160	12	167	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj6g3v0392190.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027337522.1	0.0	NAC domain-containing protein 86-like
Swissprot	Q9FFI5	1e-107	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0B2QRC9	0.0	A0A0B2QRC9_GLYSO; NAC domain-containing protein 45
TrEMBL	A0A0R0HU90	0.0	A0A0R0HU90_SOYBN; Uncharacterized protein
STRING	GLYMA11G33210.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-147	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]