PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj6g3v0326230.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bZIP

Protein Properties

Length: 370aa MW: 40050.2 Da PI: 6.6817

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj6g3v0326230.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	172	229	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK +++eLe+kv++L++e ++L +l ++ + l +e Lj6g3v0326230.1 172 KRAKRILANRQSAARSKERKARYMQELERKVQTLQTEATTLSAQLTLYQRDTSGLSTE 229 9*****************************************9999888777666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-15	168	232	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.806	170	233	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.0E-10	172	226	No hit	No description
Pfam	PF00170	5.6E-9	172	230	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.85E-11	172	223	No hit	No description
CDD	cd14703	2.86E-24	173	222	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MATKIQDPHS NPNATTANPS STLFIRGGAG DSHSHHRRSH SEVNYRLPDD MMGLSPPDPL 60 NGGSSTASLE EIGSEDDLFS TYIDVEKLGG ATDGSGRGGN GSDQSGYCNG VAGTSGHNDG 120 EKSPSAAVQR PRHRHSSSVD CSTSTSMFGE IMEAKKAMPP DKLAELWAID PKRAKRILAN 180 RQSAARSKER KARYMQELER KVQTLQTEAT TLSAQLTLYQ RDTSGLSTEN TELKLRLQAM 240 EQQAQLREAL NDALMKEVER LKVATGEAMN PSELNLGMHQ MQFAGSNFFS MPPHSGPSGH 300 HQNLQFPPFG HSPSSAPTHQ MQQTNSHQIS DMLQNDQLGR FQGLDISSKG STLVKSEGPS 360 ISASESSTTF

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MATKIQDPHS NPNATTANPS STLFIRGGAG DSHSHHRRSH SEVNYRLPDD MMGLSPPDPL  60
NGGSSTASLE EIGSEDDLFS TYIDVEKLGG ATDGSGRGGN GSDQSGYCNG VAGTSGHNDG  120
EKSPSAAVQR PRHRHSSSVD CSTSTSMFGE IMEAKKAMPP DKLAELWAID PKRAKRILAN  180
RQSAARSKER KARYMQELER KVQTLQTEAT TLSAQLTLYQ RDTSGLSTEN TELKLRLQAM  240
EQQAQLREAL NDALMKEVER LKVATGEAMN PSELNLGMHQ MQFAGSNFFS MPPHSGPSGH  300
HQNLQFPPFG HSPSSAPTHQ MQQTNSHQIS DMLQNDQLGR FQGLDISSKG STLVKSEGPS  360
ISASESSTTF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.21855	0.0	protoplast

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269\|PubMed:14704272}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj6g3v0326230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004500364.1	0.0	transcription factor RF2b-like
Swissprot	Q6S4P4	5e-94	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A1S2Y8J5	0.0	A0A1S2Y8J5_CICAR; transcription factor RF2b-like
STRING	XP_004500364.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-83	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]