PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2300330.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family RAV
Protein Properties Length: 340aa    MW: 38649.2 Da    PI: 7.9655
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2300330.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.85.4e-083983454
              AP2  4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                     kG+    ++g W A+I+       + +r++lg+f ++ eAa a++ a  kl+
  Lj5g3v2300330.1 39 KGIV-PQQNGHWGAQIYS------NhQRIWLGTFKSETEAAMAYDSATIKLR 83
                     5664.445788****999......44**********99********999887 PP
2B3832.7e-26159257185
                      EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                      f+k+ltpsdv+k++rlv+pkk+a ++               +     +++++++d+  r W+++++y+k+s++yv+t+GW++Fvk+++Lk++D+
  Lj5g3v2300330.1 159 FQKELTPSDVGKLNRLVIPKKHAVTYfpsvcggsgatngggE-MDGVDIEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDI 251
                      99******************************9999988741.3346789******************************************** PP

                      EEEEE- CS
               B3  80 vvFkld 85 
                      + F++ 
  Lj5g3v2300330.1 252 IAFYMC 257
                      ***954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.413792IPR001471AP2/ERF domain
SMARTSM003801.1E-173798IPR001471AP2/ERF domain
CDDcd000183.27E-213794No hitNo description
Gene3DG3DSA:3.30.730.102.2E-153792IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-133794IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.107.6E-31154257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-27156260IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-24157256No hitNo description
PROSITE profilePS5086310.926159278IPR003340B3 DNA binding domain
PfamPF023621.7E-23159257IPR003340B3 DNA binding domain
SMARTSM010192.0E-17159275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MISNSEASDS SEINFAFCAA KRARHEDNVA AGAGCERFKG IVPQQNGHWG AQIYSNHQRI  60
WLGTFKSETE AAMAYDSATI KLRSGESHRN FPWNDQTVQE PRFQSHYSIE TVLNMIRNGT  120
YQTKFSTFLR TQNSLEGIGT STKHLGVKGH EQFSCTHLFQ KELTPSDVGK LNRLVIPKKH  180
AVTYFPSVCG GSGATNGGGE MDGVDIEVVF YDKLMRLWKF RYCYWKSSQS YVFTRGWNRF  240
VKDKKLKAKD IIAFYMCEPI SCRITGEVFS LIDVIYNNNN NNNNNNADHR RQCVDETQNL  300
GNKLICSDEV EDQDEGQETK DRKDDLNAQR GLRLFGVSIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-27157257696B3 domain-containing transcription factor NGA1
5os9_B1e-27157257696B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2300330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019439051.11e-152PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P54e-98RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0R0ESD61e-146A0A0R0ESD6_SOYBN; Uncharacterized protein
STRINGGLYMA20G39140.21e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.13e-92RAV family protein