PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2300300.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 299aa    MW: 31669.7 Da    PI: 9.5832
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2300300.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-08102127227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C+ +  +  Ck+GdrC+FaHg+
  Lj5g3v2300300.1 102 KTRMCNKYNSSEGCKFGDRCHFAHGE 127
                      899*********************96 PP
2zf-CCCH36.86.6e-12267290226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      kt+lC +fa+ G C +G+rC+FaHg
  Lj5g3v2300300.1 267 KTKLCENFAK-GSCTFGERCHFAHG 290
                      9*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.2863361IPR000571Zinc finger, CCCH-type
SMARTSM003561.13360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-63459IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-73558IPR000571Zinc finger, CCCH-type
PfamPF146080.894158No hitNo description
SuperFamilySSF902291.31E-898131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-1598131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.887101128IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-5102127IPR000571Zinc finger, CCCH-type
SMARTSM003560.34102127IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.48E-14168244IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.4E-15171242IPR004088K Homology domain, type 1
SMARTSM003225.3E-10172242IPR004087K Homology domain
PROSITE profilePS5008413.816173237IPR004088K Homology domain, type 1
PfamPF000138.8E-11175239IPR004088K Homology domain, type 1
CDDcd001051.09E-12177238No hitNo description
Gene3DG3DSA:4.10.1000.101.3E-15262297IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-7265291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.493265292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-8265295IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9267290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDRKRGRPEG AFNGNGGAKK SKPEMESFTT GLGSKSKPCT KFFSTSGCPF GDGCHFLHYV  60
PGGFKAISQM INVGSSPTIP QMGRNPVPPP SFPDGSSPPV VKTRMCNKYN SSEGCKFGDR  120
CHFAHGEWEL GRPTLPPYED PRGFGQMQSN RGGGRIEPPP PGRGAAAAGF GASATAKISI  180
NASLAGAIIG KNGVNSKQIC RVTGAKLSIR EHDSDPNLKN IELEGSFDQI NQASAMVHEL  240
ILSVSSVSGP PAKNFSSQHS APGSNLKTKL CENFAKGSCT FGERCHFAHG TDELRRPGM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.41690.0floral bud| pod| protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2300300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1425210.0BT142521.1 Lotus japonicus clone JCVI-FLLj-16L24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497409.11e-180zinc finger CCCH domain-containing protein 44-like
SwissprotQ7F8R01e-113C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S2Y1T71e-179A0A1S2Y1T7_CICAR; zinc finger CCCH domain-containing protein 44-like
STRINGXP_004497409.11e-179(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-53C3H family protein