PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2264200.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 180aa    MW: 19737 Da    PI: 9.0324
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2264200.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001593115123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  Fs    L  H+r+H
  Lj5g3v2264200.1  93 HECSICGLEFSIGQALGGHMRRH 115
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.84E-845115No hitNo description
PfamPF139124.3E-124671IPR007087Zinc finger, C2H2
SMARTSM003550.374769IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9934774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PfamPF139121.3E-992116IPR007087Zinc finger, C2H2
PROSITE profilePS501579.16293120IPR007087Zinc finger, C2H2
SMARTSM003550.3293115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MMKREFREID HSITMANYLM LLSQQGGPYE TTTTYVNSSN NNNNRVFECK TCNRKFQSFQ  60
ALGGHRASHK KPRLEDGGES NDHGSSPPKA KTHECSICGL EFSIGQALGG HMRRHKTPSN  120
KGSATTSSSG GSGSGTIDTS ANREKENRRV LFPDLNLTPI ENGLVFLKIG QATPLVDCFN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.136680.0cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2264200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061000.0AP006100.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT03D07, TM0180b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020225769.11e-67zinc finger protein ZAT11-like
TrEMBLA0A0S3SL822e-64A0A0S3SL82_PHAAN; Uncharacterized protein
TrEMBLA0A151U8191e-63A0A151U819_CAJCA; COBW domain-containing protein 2
STRINGGLYMA10G43630.12e-61(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-31C2H2 family protein