PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v2264060.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

WOX

Protein Properties

Length: 270aa MW: 30990.5 Da PI: 5.4316

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v2264060.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.7	3e-21	94	154	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +p++e+++e+A+ l +++e++V++WFqNrRa+ k+ Lj5g3v2264060.2 94 RQRWNPTPIQLQILESIFDQgNGTPNKEKIKEIAADLvqhgQVSETNVYNWFQNRRARSKR 154 89***************99************************************97 PP
2	Wus_type_Homeobox	99.7	2.2e-32	93	155	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+Ptp Q++iLe+++++G tPnke+i++i+a L ++G+++++NV++WFQNr+aR+++k Lj5g3v2264060.2 93 SRQRWNPTPIQLQILESIFDQGNGTPNKEKIKEIAADLVQHGQVSETNVYNWFQNRRARSKRK 155 789***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.85E-18	87	156	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.3E-17	87	157	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.997	90	155	IPR001356	Homeobox domain
SMART	SM00389	7.6E-13	92	159	IPR001356	Homeobox domain
Pfam	PF00046	4.4E-19	94	154	IPR001356	Homeobox domain
CDD	cd00086	1.94E-13	94	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MVNLMEWKDQ LQMWQQQNGN VNVGVQREMM YVKVMTDEQL ETLRKQIAVY ATICEQLIEM 60 HRTFSTQQDL AGVRLGNIYF DPLMTSSGHK LTSRQRWNPT PIQLQILESI FDQGNGTPNK 120 EKIKEIAADL VQHGQVSETN VYNWFQNRRA RSKRKLQNVA PSTTESEADT EVDSKDRKTK 180 PEEFYSQQNN VTTEVDLQCL NDSGSNNKPY SMFPSDGSLS STRKLSHVPV FDGVLSNSRS 240 DYQTGKMGED ESYNLYKQAG DYNMEGRYLG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v2264060.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006099	0.0	AP006099.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT03D07, TM0180a, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017413979.1	1e-139	PREDICTED: WUSCHEL-related homeobox 8-like isoform X1
Swissprot	O81788	3e-80	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A0L9U178	1e-137	A0A0L9U178_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SL91	1e-137	A0A0S3SL91_PHAAN; Uncharacterized protein
STRING	XP_007142723.1	1e-131	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-81	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]