PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v2264060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WOX | ||||||||
Protein Properties | Length: 270aa MW: 30990.5 Da PI: 5.4316 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.7 | 3e-21 | 94 | 154 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +p++e+++e+A+ l +++e++V++WFqNrRa+ k+ Lj5g3v2264060.1 94 RQRWNPTPIQLQILESIFDQgNGTPNKEKIKEIAADLvqhgQVSETNVYNWFQNRRARSKR 154 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 99.7 | 2.2e-32 | 93 | 155 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+Ptp Q++iLe+++++G tPnke+i++i+a L ++G+++++NV++WFQNr+aR+++k Lj5g3v2264060.1 93 SRQRWNPTPIQLQILESIFDQGNGTPNKEKIKEIAADLVQHGQVSETNVYNWFQNRRARSKRK 155 789***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.85E-18 | 87 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-17 | 87 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.997 | 90 | 155 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.6E-13 | 92 | 159 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.4E-19 | 94 | 154 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.94E-13 | 94 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MVNLMEWKDQ LQMWQQQNGN VNVGVQREMM YVKVMTDEQL ETLRKQIAVY ATICEQLIEM 60 HRTFSTQQDL AGVRLGNIYF DPLMTSSGHK LTSRQRWNPT PIQLQILESI FDQGNGTPNK 120 EKIKEIAADL VQHGQVSETN VYNWFQNRRA RSKRKLQNVA PSTTESEADT EVDSKDRKTK 180 PEEFYSQQNN VTTEVDLQCL NDSGSNNKPY SMFPSDGSLS STRKLSHVPV FDGVLSNSRS 240 DYQTGKMGED ESYNLYKQAG DYNMEGRYLG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00617 | PBM | Transfer from AT4G35550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v2264060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006099 | 0.0 | AP006099.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT03D07, TM0180a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413979.1 | 1e-139 | PREDICTED: WUSCHEL-related homeobox 8-like isoform X1 | ||||
Swissprot | O81788 | 3e-80 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | A0A0L9U178 | 1e-137 | A0A0L9U178_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SL91 | 1e-137 | A0A0S3SL91_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142723.1 | 1e-131 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 5e-81 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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