PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2258260.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 315aa    MW: 33518.9 Da    PI: 7.2872
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2258260.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.53.3e-3364121359
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      +v+YkeClkNh aslGgha+DGCgEfmps++++  +++++kCaACgCHRnFHRre+ee
  Lj5g3v2258260.1  64 TVTYKECLKNHVASLGGHALDGCGEFMPSPTATaDDPSSIKCAACGCHRNFHRREPEE 121
                      699***************************999889******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2265118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.0E-2765119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.5E-3066118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5467118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.8E-30187257IPR009057Homeodomain-like
SuperFamilySSF466894.78E-19187257IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-26196253IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEVLTTATNN ITSTAKSPEP ETETPTRIQQ PGNVNATAKP LSFSNGVLKR HHPPAPHANH  60
SPVTVTYKEC LKNHVASLGG HALDGCGEFM PSPTATADDP SSIKCAACGC HRNFHRREPE  120
EPPITAAHHV FEYQPHHRHH PPPPVPFNRS PNSASPPPIS SYPSAPHMLL ALSGAGLPVP  180
PENTAAPTQT PGSDSRKRFR TKFTPGQKEK MLEFAERVGW KMQKRDEDLV MEFCNEVGVD  240
RGVLKVWMHN NKNTFGKRDH AAANGGAGGG DDDGAGGGER AINGNGNGSA ASQDPNQYEN  300
DSGTNGATNG SSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-221952541675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.128441e-120cell culture
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2258260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105710.0AP010571.1 Lotus japonicus genomic DNA, clone: LjT17J13, TM1835, complete sequence.
GenBankAP0105720.0AP010572.1 Lotus japonicus genomic DNA, clone: LjT38M11, TM1877, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027358362.11e-131zinc-finger homeodomain protein 9
SwissprotQ9LXG01e-74ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A1S3UZH51e-107A0A1S3UZH5_VIGRR; zinc-finger homeodomain protein 9
STRINGGLYMA13G05420.11e-107(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-73homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]