PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2193970.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CO-like
Protein Properties Length: 422aa    MW: 46736.1 Da    PI: 5.0487
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2193970.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.82.6e-091659340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+ +  k+++++C  ++ +lC+ C ++ H+       H++v
  Lj5g3v2193970.1 16 ARACDSCITKRARWYCAADDAFLCQACDSSVHSAnplarrHERV 59
                     578*****************************667888888876 PP
2CCT66.11e-22365408144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eKr++R+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Lj5g3v2193970.1 365 REARVLRYREKRRRRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 408
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.4E-101461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.851461IPR000315B-box-type zinc finger
PfamPF006435.3E-81659IPR000315B-box-type zinc finger
CDDcd000213.60E-101761No hitNo description
PROSITE profilePS5101716.093365407IPR010402CCT domain
PfamPF062032.9E-17365407IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MSSTKNVANA VGGRTARACD SCITKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR  60
LKTASYKSGG GGSEPSWHGG FTKKARTPRQ GKGMKQRNNP FHLVPEVGLD EVNSNSHEEN  120
EEHEQLLYRV PVYDPFVGAE LCSTPNSSLN SAVVAVANAS DSDSGPKVQE DYELESLQGI  180
LIPSDVELAE FAADVESLLG RGLENECMGM EELGLIDASK QEEWECSVGS EKVKVEEEEG  240
QQVGGGEMGR ESISFELNFD YDDSLETCED EVKEINGDDD MGKGSSELIK ENGKRKILQL  300
DYDAVIIAWS GQKSPWTTGA KPDLDLEEFW PECMGTCGTE VQHPYGGEWS SGFGCHPAVM  360
ADGGREARVL RYREKRRRRL FSKKIRYEVR KLNAEKRPRM KGRFVKRASF AAAPTTFPLL  420
NK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374379KRRRRL
2376391RRRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2193970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150414e-46AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027367040.10.0zinc finger protein CONSTANS-LIKE 16-like isoform X1
SwissprotQ8RWD01e-107COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1S2XZU81e-176A0A1S2XZU8_CICAR; zinc finger protein CONSTANS-LIKE 16
STRINGXP_004497095.11e-177(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-86B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]