PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v2099760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 25034.4 Da PI: 8.2272 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.6 | 9.7e-29 | 34 | 135 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakd.Cvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+ d C+l+ ++ p++q++++ +v+k+FG+++++++l+++p+++r+++++sl+yeA ra +Pv+Gavg+++++++ql+ Lj5g3v2099760.1 34 SCNGCRVLRKGCSGDdCMLRHCLrwiesPQAQANATVFVAKFFGRATLMSFLSSVPTNQRSALFESLLYEAVGRALNPVSGAVGLLWSGNWQLC 127 6***********9655****************************************************************************** PP DUF260 89 qlkaelal 96 q+ +e +l Lj5g3v2099760.1 128 QSGVEKVL 135 *9887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.849 | 33 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-24 | 34 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MLYSLSFLHI NPASFLHIYA LLTQDIHQSH KKMSCNGCRV LRKGCSGDDC MLRHCLRWIE 60 SPQAQANATV FVAKFFGRAT LMSFLSSVPT NQRSALFESL LYEAVGRALN PVSGAVGLLW 120 SGNWQLCQSG VEKVLQGGGA LTPLPQFSGV DHESSEGFES FIAGSSPSRK LKINHEAESS 180 GLVVGGGGGR CHQAKKQRVR TPSEESEGST LGNRGEDCGS DSERKLLPLF F |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v2099760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147142 | 0.0 | BT147142.1 Lotus japonicus clone JCVI-FLLj-4E18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027367614.1 | 1e-91 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 1e-52 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | I3T344 | 1e-143 | I3T344_LOTJA; Uncharacterized protein | ||||
STRING | XP_007143107.1 | 5e-81 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-55 | LOB domain-containing protein 38 |