PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v2045620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | TCP | ||||||||
Protein Properties | Length: 223aa MW: 25288.1 Da PI: 8.1397 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 67.9 | 3.5e-21 | 1 | 107 | 38 | 133 |
TCP 38 eLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsssg...............kaaksaakskksqksaasalnla 111 +L fdk+s+t+eWL+++++ ai+el+++ ss+s+++ +++++ + + +s+ k +++++ ++l+ + Lj5g3v2045620.1 1 MLEFDKPSNTLEWLFTKSESAIQELARSkncscSSNSNNNPSNNNK---------SlfgggdnhngtnsirGRGNSKLKWTTQRDQDVCVLQNK 85 89**************************555441112211112222.........133334444456777577777779*************** PP TCP 112 kesrakarararertrekmrik 133 kesr++arararert km + Lj5g3v2045620.1 86 KESRERARARARERTCYKMLED 107 ******************9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-15 | 1 | 104 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 16.572 | 1 | 25 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.643 | 86 | 103 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MLEFDKPSNT LEWLFTKSES AIQELARSKN CSCSSNSNNN PSNNNKSLFG GGDNHNGTNS 60 IRGRGNSKLK WTTQRDQDVC VLQNKKESRE RARARARERT CYKMLEDQRC PANTTQIMHQ 120 LRSSSPIQLL QPYPHLMDNS EAVSGGGGGD GFNVIEESIM IKRNMMSSNS HPHENHHLAI 180 PNKEAGFNNN YIDYPLLQPY STTPNWEIAT MNMNLSTCFM NQW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 98 | RERARARARER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v2045620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010441 | 0.0 | AP010441.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT32M13, TM1651, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020232454.2 | 2e-49 | transcription factor DICHOTOMA isoform X1 | ||||
Refseq | XP_029128870.1 | 9e-50 | transcription factor DICHOTOMA isoform X2 | ||||
TrEMBL | Q1WK56 | 1e-166 | Q1WK56_LOTJA; CYC3 | ||||
STRING | GLYMA20G28670.1 | 1e-48 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Publications ? help Back to Top | |||
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