PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v2029540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | TCP | ||||||||
Protein Properties | Length: 333aa MW: 34964.8 Da PI: 5.2231 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119 | 5.8e-37 | 67 | 140 | 2 | 74 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+qa+p+i+e+tgt++ +a ++ Lj5g3v2029540.1 67 PAAKKPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEQAEPSIIEATGTGTVPAIAVsV 140 6789************************************************************7777743321 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.6E-29 | 73 | 145 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.52 | 73 | 127 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031347 | Biological Process | regulation of defense response |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MEMNPTHNGG FSEGENGTNS ADISPSETTV AMVEPPEQPP EMKEELTETE HRLVESFPTG 60 VITVAAPAAK KPSKDRHTKV EGRGRRIRMP ATCAARIFQL TRELGHKSDG ETIRWLLEQA 120 EPSIIEATGT GTVPAIAVSV GGTLKIPTSS PARPEGEDDN PRKRRRRPSN SEFIDIKDQA 180 SVCSGLAPIA QTAYGGAGGG LVPMWPVANG GGGGGGGNPT GPYFMFPNTA NQPQYWAIPA 240 NTVGPFFNVE GRPISGFVSA MQIAEAASAN SSSSTFAPAL SSPTTATTSS AVTTSSSSTQ 300 MLRDFSLEIY DKRELQFLGG SSAHSESPST SNP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 167 | PRKRRRRP |
2 | 161 | 165 | RKRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00064 | PBM | Transfer from AT5G51910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v2029540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP007308 | 0.0 | AP007308.2 Lotus japonicus genomic DNA, chromosome 5, clone: LjT35J07, TM1672, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027366958.1 | 1e-135 | transcription factor TCP19 | ||||
Swissprot | Q9LT89 | 4e-77 | TCP19_ARATH; Transcription factor TCP19 | ||||
TrEMBL | A0A072VQN8 | 1e-129 | A0A072VQN8_MEDTR; Putative transcription factor TCP family | ||||
STRING | AES62590 | 1e-129 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 7e-69 | TCP family protein |