PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v2017090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 661aa MW: 73510.8 Da PI: 6.3826 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.6 | 3.3e-21 | 76 | 131 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t++q++eLe++F+++++p++++r +L+++lgL+ +qVk+WFqNrR+++k Lj5g3v2017090.1 76 RKRYHRHTPNQIQELENFFKECPHPDEKQRMDLSRRLGLENKQVKFWFQNRRTQMK 131 789999***********************************************999 PP | |||||||
2 | START | 176 | 2.3e-55 | 287 | 510 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la++a++el+k+a+ ++p+W+ks+ e +n++e+ ++f++ + + +ea+r++gv ++ lve ++d + +W +++ +a++l Lj5g3v2017090.1 287 LALAAMEELLKMAQTDSPLWMKSAdggkEVLNNEEYARSFSPCIGpkptgYVTEASRETGVMMINSLALVEAMMDAN-RWADMFPsmiaRAAIL 379 6899**********************9999**********99988********************************.*******9999***** PP EEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 83 evissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168 +v+s g galq+m ae q+lsplvp R + f+R+++q+ +g+w+++dvSv+ + + ++++ +++lpSg+++++++ng+ kvtwve Lj5g3v2017090.1 380 DVVSGGissgtrnGALQVMHAEVQLLSPLVPnRQVRFLRFCKQHAEGVWAVADVSVEMGHDAATAQPFMSCRRLPSGCIVQDMPNGYAKVTWVE 473 *************************************************************999****************************** PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 h+++++++ h+l+r+l++ g+ +ga +w atlqrq e Lj5g3v2017090.1 474 HWEYDENIAHQLYRPLLNCGMGFGAHRWIATLQRQSE 510 **********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.38E-20 | 58 | 133 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-22 | 62 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.767 | 73 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.1E-19 | 74 | 137 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.47E-19 | 75 | 133 | No hit | No description |
Pfam | PF00046 | 8.2E-19 | 76 | 131 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.119 | 277 | 514 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.94E-31 | 279 | 511 | No hit | No description |
CDD | cd08875 | 8.12E-111 | 281 | 510 | No hit | No description |
SMART | SM00234 | 9.1E-33 | 286 | 511 | IPR002913 | START domain |
Pfam | PF01852 | 4.9E-46 | 287 | 510 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.6E-4 | 374 | 482 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.51E-11 | 530 | 646 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 661 aa Download sequence Send to blast |
MSQPMSSAMQ NSPAFFSNPR GMEGHNEMGL IGEGLDSGLL GRMRDDEYES RSGSDNFDGG 60 ASGDELDGGD DLPHRRKRYH RHTPNQIQEL ENFFKECPHP DEKQRMDLSR RLGLENKQVK 120 FWFQNRRTQM KTQLERHENL MLRQENEKLR AENTMMKEAM NNPICNSCGG PAMPGQISFE 180 EHQIRIENAR LKDELNRICT LTNKFLGKPM ASFTSPMGLP ASHSGLELSI GRNGLGSSSS 240 LGTPLPMGLD FGDGVMGTPS SMPGLTSQMG SMSRNELQLD RSMLIDLALA AMEELLKMAQ 300 TDSPLWMKSA DGGKEVLNNE EYARSFSPCI GPKPTGYVTE ASRETGVMMI NSLALVEAMM 360 DANRWADMFP SMIARAAILD VVSGGISSGT RNGALQVMHA EVQLLSPLVP NRQVRFLRFC 420 KQHAEGVWAV ADVSVEMGHD AATAQPFMSC RRLPSGCIVQ DMPNGYAKVT WVEHWEYDEN 480 IAHQLYRPLL NCGMGFGAHR WIATLQRQSE CLAVLMSSIS SGDHTAMNQD GRRSMLKLAQ 540 RMTKNFCSGV CASSVHKWEL LHLGNMGDDM RVMTRKNLDD PGEPHGIVLS AATSVWMPVS 600 RQRLFDFLRD EQLRSEWDIL SNGGPMQEMV HIAKGQGQGN CVSLLRASVS DLLLYYCLFA 660 V |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v2017090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 5e-59 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014514419.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Refseq | XP_022641349.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Swissprot | Q9M2E8 | 0.0 | HDG1_ARATH; Homeobox-leucine zipper protein HDG1 | ||||
TrEMBL | A0A1S3V8F6 | 0.0 | A0A1S3V8F6_VIGRR; homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
STRING | XP_007143378.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Publications ? help Back to Top | |||
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