PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v2017090.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

HD-ZIP

Protein Properties

Length: 661aa MW: 73510.8 Da PI: 6.3826

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v2017090.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.3e-21	76	131	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t++q++eLe++F+++++p++++r +L+++lgL+ +qVk+WFqNrR+++k Lj5g3v2017090.1 76 RKRYHRHTPNQIQELENFFKECPHPDEKQRMDLSRRLGLENKQVKFWFQNRRTQMK 131 789999***********************************************999 PP
2	START	176	2.3e-55	287	510	2	205
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la++a++el+k+a+ ++p+W+ks+ e +n++e+ ++f++ + + +ea+r++gv ++ lve ++d + +W +++ +a++l Lj5g3v2017090.1 287 LALAAMEELLKMAQTDSPLWMKSAdggkEVLNNEEYARSFSPCIGpkptgYVTEASRETGVMMINSLALVEAMMDAN-RWADMFPsmiaRAAIL 379 6899********************9999******99988****************************.***9999* PP EEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 83 evissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168 +v+s g galq+m ae q+lsplvp R + f+R+++q+ +g+w+++dvSv+ + + ++++ +++lpSg+++++++ng+ kvtwve Lj5g3v2017090.1 380 DVVSGGissgtrnGALQVMHAEVQLLSPLVPnRQVRFLRFCKQHAEGVWAVADVSVEMGHDAATAQPFMSCRRLPSGCIVQDMPNGYAKVTWVE 473 *********************************************************999************************** PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 h+++++++ h+l+r+l++ g+ +ga +w atlqrq e Lj5g3v2017090.1 474 HWEYDENIAHQLYRPLLNCGMGFGAHRWIATLQRQSE 510 ********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.38E-20	58	133	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.2E-22	62	133	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.767	73	133	IPR001356	Homeobox domain
SMART	SM00389	8.1E-19	74	137	IPR001356	Homeobox domain
CDD	cd00086	1.47E-19	75	133	No hit	No description
Pfam	PF00046	8.2E-19	76	131	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	108	131	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	41.119	277	514	IPR002913	START domain
SuperFamily	SSF55961	4.94E-31	279	511	No hit	No description
CDD	cd08875	8.12E-111	281	510	No hit	No description
SMART	SM00234	9.1E-33	286	511	IPR002913	START domain
Pfam	PF01852	4.9E-46	287	510	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	4.6E-4	374	482	IPR023393	START-like domain
SuperFamily	SSF55961	1.51E-11	530	646	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
MSQPMSSAMQ NSPAFFSNPR GMEGHNEMGL IGEGLDSGLL GRMRDDEYES RSGSDNFDGG 60 ASGDELDGGD DLPHRRKRYH RHTPNQIQEL ENFFKECPHP DEKQRMDLSR RLGLENKQVK 120 FWFQNRRTQM KTQLERHENL MLRQENEKLR AENTMMKEAM NNPICNSCGG PAMPGQISFE 180 EHQIRIENAR LKDELNRICT LTNKFLGKPM ASFTSPMGLP ASHSGLELSI GRNGLGSSSS 240 LGTPLPMGLD FGDGVMGTPS SMPGLTSQMG SMSRNELQLD RSMLIDLALA AMEELLKMAQ 300 TDSPLWMKSA DGGKEVLNNE EYARSFSPCI GPKPTGYVTE ASRETGVMMI NSLALVEAMM 360 DANRWADMFP SMIARAAILD VVSGGISSGT RNGALQVMHA EVQLLSPLVP NRQVRFLRFC 420 KQHAEGVWAV ADVSVEMGHD AATAQPFMSC RRLPSGCIVQ DMPNGYAKVT WVEHWEYDEN 480 IAHQLYRPLL NCGMGFGAHR WIATLQRQSE CLAVLMSSIS SGDHTAMNQD GRRSMLKLAQ 540 RMTKNFCSGV CASSVHKWEL LHLGNMGDDM RVMTRKNLDD PGEPHGIVLS AATSVWMPVS 600 RQRLFDFLRD EQLRSEWDIL SNGGPMQEMV HIAKGQGQGN CVSLLRASVS DLLLYYCLFA 660 V

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

MSQPMSSAMQ NSPAFFSNPR GMEGHNEMGL IGEGLDSGLL GRMRDDEYES RSGSDNFDGG  60
ASGDELDGGD DLPHRRKRYH RHTPNQIQEL ENFFKECPHP DEKQRMDLSR RLGLENKQVK  120
FWFQNRRTQM KTQLERHENL MLRQENEKLR AENTMMKEAM NNPICNSCGG PAMPGQISFE  180
EHQIRIENAR LKDELNRICT LTNKFLGKPM ASFTSPMGLP ASHSGLELSI GRNGLGSSSS  240
LGTPLPMGLD FGDGVMGTPS SMPGLTSQMG SMSRNELQLD RSMLIDLALA AMEELLKMAQ  300
TDSPLWMKSA DGGKEVLNNE EYARSFSPCI GPKPTGYVTE ASRETGVMMI NSLALVEAMM  360
DANRWADMFP SMIARAAILD VVSGGISSGT RNGALQVMHA EVQLLSPLVP NRQVRFLRFC  420
KQHAEGVWAV ADVSVEMGHD AATAQPFMSC RRLPSGCIVQ DMPNGYAKVT WVEHWEYDEN  480
IAHQLYRPLL NCGMGFGAHR WIATLQRQSE CLAVLMSSIS SGDHTAMNQD GRRSMLKLAQ  540
RMTKNFCSGV CASSVHKWEL LHLGNMGDDM RVMTRKNLDD PGEPHGIVLS AATSVWMPVS  600
RQRLFDFLRD EQLRSEWDIL SNGGPMQEMV HIAKGQGQGN CVSLLRASVS DLLLYYCLFA  660
V

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269\|PubMed:16778018}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v2017090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	5e-59	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014514419.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Refseq	XP_022641349.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Swissprot	Q9M2E8	0.0	HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBL	A0A1S3V8F6	0.0	A0A1S3V8F6_VIGRR; homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
STRING	XP_007143378.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	0.0	homeodomain GLABROUS 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Horstman A, et al. AIL and HDG proteins act antagonistically to control cell proliferation. Development, 2015. 142(3): p. 454-64 [PMID:25564655]