PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2013880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 273aa    MW: 31190 Da    PI: 9.4194
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2013880.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l +++ ++G g+W++++   g+ R +k+c++rw +yl
  Lj5g3v2013880.1 15 KGLWSPEEDHKLRNYILKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP

2Myb_DNA-binding47.25.2e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr  ++E+e +  ++ +lG++ W+ Ia++++ gRt++++k++w++yl
  Lj5g3v2013880.1  68 RGRLNKQEEETITTLHDMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 113
                      788999****************.*********.************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-21964IPR009057Homeodomain-like
PROSITE profilePS5129424.2141066IPR017930Myb domain
SuperFamilySSF466899.9E-2812109IPR009057Homeodomain-like
SMARTSM007176.4E-101464IPR001005SANT/Myb domain
PfamPF002497.0E-141562IPR001005SANT/Myb domain
CDDcd001671.15E-81862No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2365117IPR009057Homeodomain-like
PROSITE profilePS5129419.76467117IPR017930Myb domain
SMARTSM007171.5E-1367115IPR001005SANT/Myb domain
PfamPF002493.2E-1368113IPR001005SANT/Myb domain
CDDcd001676.39E-972113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGFQPLEKAK PKHRKGLWSP EEDHKLRNYI LKHGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGR LNKQEEETIT TLHDMLGNKW SQIAQHLPGR TDNEIKNYWH SYLKKRVAKA  120
KELEFHKQIQ HASSSSDTMD SSPSVQNLAT QGPQNYLFTK EASQSSLPKL LFAEWLSLDH  180
VHSGNSANSV DSLVLRNGFD QNSTFQEKAV YDNIQEMPFG GEYHNTLTNI SAPEIFNSQL  240
KFANQMVGNG FLHYIPEVDF SSNFSLSNNA MYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-21111173108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2013880.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0080330.0AP008033.2 Lotus japonicus genomic DNA, chromosome 5, clone: LjT27I11, TM1382, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496837.11e-164transcription factor LAF1-like
SwissprotQ9M0K42e-60LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A1S2Y1341e-162A0A1S2Y134_CICAR; transcription factor LAF1-like
STRINGXP_004496837.11e-163(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.12e-62myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]