PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v2013880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 31190 Da PI: 9.4194 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.3e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd +l +++ ++G g+W++++ g+ R +k+c++rw +yl Lj5g3v2013880.1 15 KGLWSPEEDHKLRNYILKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.2 | 5.2e-15 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr ++E+e + ++ +lG++ W+ Ia++++ gRt++++k++w++yl Lj5g3v2013880.1 68 RGRLNKQEEETITTLHDMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 113 788999****************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 9 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.214 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.9E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-10 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-8 | 18 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 65 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.764 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-13 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.39E-9 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGFQPLEKAK PKHRKGLWSP EEDHKLRNYI LKHGHGCWSS VPINAGLQRN GKSCRLRWIN 60 YLRPGLKRGR LNKQEEETIT TLHDMLGNKW SQIAQHLPGR TDNEIKNYWH SYLKKRVAKA 120 KELEFHKQIQ HASSSSDTMD SSPSVQNLAT QGPQNYLFTK EASQSSLPKL LFAEWLSLDH 180 VHSGNSANSV DSLVLRNGFD QNSTFQEKAV YDNIQEMPFG GEYHNTLTNI SAPEIFNSQL 240 KFANQMVGNG FLHYIPEVDF SSNFSLSNNA MYV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-21 | 11 | 117 | 3 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v2013880.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP008033 | 0.0 | AP008033.2 Lotus japonicus genomic DNA, chromosome 5, clone: LjT27I11, TM1382, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496837.1 | 1e-164 | transcription factor LAF1-like | ||||
Swissprot | Q9M0K4 | 2e-60 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A1S2Y134 | 1e-162 | A0A1S2Y134_CICAR; transcription factor LAF1-like | ||||
STRING | XP_004496837.1 | 1e-163 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3830 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 2e-62 | myb domain protein 18 |
Publications ? help Back to Top | |||
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