PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1949500.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 242aa    MW: 27282.7 Da    PI: 5.0081
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1949500.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.15.1e-15160220362
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklkse 62 
                      + +r+rr++kNRe+A rsR+RK+a++ eLe  + +Le+eN++L k+++e+ k+  ++l  e
  Lj5g3v1949500.1 160 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLlKEKAERTKERFKQLMEE 220
                      679*************************************996266788999888888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-12156219No hitNo description
SMARTSM003381.6E-9158220IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.749160212IPR004827Basic-leucine zipper domain
PfamPF001706.8E-13160219IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.01E-9162213No hitNo description
CDDcd147073.36E-18162208No hitNo description
PROSITE patternPS000360165180IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MASSKMMMSS SKSLDHQQPS SPPPSSMPQF TTTNFIDHAD STLTDPYVPR TVDDVWQEII  60
AGDHHQCKEE IPDEMMTLED FLVKAGAVDG DDEDDEVKMS MPLTERLSGV FSLDGSSFQG  120
MEGVEGGSAS VGGFGNGVEV VEGTRGKRGR PVVENLDKAA QQRQRRMIKN RESAARSRER  180
KQAYQVELES LAVKLEEEND KLLKEKAERT KERFKQLMEE VIPVVEKRRP PRPLRRINSM  240
QW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.31090.0floral bud| flower| pod| root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1949500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045240.0AP004524.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT08O18, TM0052a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496457.11e-112G-box-binding factor 4-like
RefseqXP_004496458.11e-112G-box-binding factor 4-like
SwissprotP427772e-59GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A1S2XYG21e-110A0A1S2XYG2_CICAR; G-box-binding factor 4-like
STRINGXP_004496457.11e-111(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.14e-44G-box binding factor 4