PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v1839400.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

MYB

Protein Properties

Length: 1407aa MW: 152343 Da PI: 6.4067

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v1839400.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.2	4.5e-09	798	839	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++++ ++ lG++ +++Ia+ + ++t +c+++++k Lj5g3v1839400.2 798 PWTSEEREIFLEKFAALGKD-FRKIASFLD-HKTTADCVEFYYK 839 8***************99.*****.*********98 PP
2	Myb_DNA-binding	31.7	3.5e-10	1014	1055	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT +E l++av +G++ +++Iar++g +++ +qck ++ k Lj5g3v1839400.2 1014 DWTDDEKAALLQAVSSFGKD-FAKIARCVG-TKSQEQCKVFFTK 1055 5***************99.*****.******88766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.29E-13	782	842	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.635	794	845	IPR017884	SANT domain
SMART	SM00717	9.9E-9	795	843	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-6	797	839	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-5	798	839	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.99E-10	1010	1061	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.067	1010	1061	IPR017884	SANT domain
SMART	SM00717	4.0E-9	1011	1059	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-7	1014	1055	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-8	1014	1055	IPR001005	SANT/Myb domain
CDD	cd00167	7.51E-8	1015	1055	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1407 aa Download sequence Send to blast
MPPEPLPWDR KDFFKERKHE RSESVGSVAR WRDSSHHRDF HRWGSAEFRR PPGHGKQGGW 60 HLFSEESGHG YAGSRSGDKM VEEDSRPSIS RGDGKYGRSG SRENRGSSGP RDWRGHSWEN 120 SNGSQNFSRR PPDVNNDQRS VDDTLAHSSH PHSDFANNSW DQHHLKDQND KMGGFNGTGT 180 GPRCDRENSL GAADWKPLKW TRSGSLSSRA SGFSHTSSSR SMGGADSYEV KAELQPKNAT 240 ASKSHSGEAA TARVTSSAPS EDTTSRKKPR LGWGEGLAKY EKKKVEGPEL SVNKDGPVSS 300 TSNMEPCNVF SPNLVDKSPK LTGFSDCASP ATPSSVACSS SPGVDDKLFS KSANVDSDFS 360 NLTGSPAPGS QNHLQKFSFN LHNLDIYSLN NLGSSIVDLV QSDDPSSVDS GLGRSSAINK 420 LLIWKADISK VLEMTETEID SLENELKSLK SEPGDKCPPA PGSQVVGNNE IFCEDLAGVN 480 KVTRPVPLKI VSSDEPDVEK MPQSNNLHSI HENANEEGID SPGTATSKFV EPLPLIKAVS 540 SCEARGYDNF SADLNARQSA AVKSLVPCTT RRNASVSACG DSNTSMEVKV SLDASSGASL 600 SYSSEDIYNT IISSNKEIAD RAHDAFAKLL PKECCKIDNV GANNGSCTGG LIVEKIAEKK 660 QFARFKERVI ALKFKALHHV WKEDMRLLSM KKCRQKSHKK NELSVRTTYN GNQKNRSSIR 720 SRFTSPAGNH LSMVPTSEII NFTSTLLSES QVKAQRNALK MPALILDEKE KLISKFISSN 780 GLVEDPLAVE KEKAMINPWT SEEREIFLEK FAALGKDFRK IASFLDHKTT ADCVEFYYKN 840 HKSDCFVKLK KEGLCKLGKS FSAKTSLVAS GKKWNREVNA ASLEILSAAS VMADGMSGNK 900 KMRSRSFLLG GYGNVKKSKG EDSFIDRSSS FDIHGDERET AAAADVLAGI CGSLSSEAMS 960 SCITSSVDPV DGNTDRKFLK ANPLCRKPLT PDVTQNVEDE TCSDQSSDEM DLSDWTDDEK 1020 AALLQAVSSF GKDFAKIARC VGTKSQEQCK VFFTKARKCL RLDLMHPIPG NGRSLGNDDA 1080 NGGGSDTDDA CVVETGSAVG TDKSGTKTDE DLPSMNAFHD ESNPVEPRNL SAELNESKEN 1140 NLTAVDLEDI NLISDACAIK VESKLGSDDD SEVVLASPDK SASVSERAAM IMSGSIEGGK 1200 ERANKLGGAE LISAPEVVEL RECNSVPADR LTSEVSLGGL GNKLKTQRVL SPHCFDDRDD 1260 KHEANTGVVE LKSSVQDSST SLNVSLSSVG SSYSGLCFDS ENKHVFVGKP PISALSLKEF 1320 HPTANSLLQN AAADVQSEKA ASQVQLSSTS DIQGIRDMHC HNPISNGDHQ LPLPGNHLMA 1380 SILQGYPLQV PIKKEVNVNM NCSGSED

Sequence ? help Back to Top

Protein Sequence Length: 1407 aa Download sequence Send to blast

MPPEPLPWDR KDFFKERKHE RSESVGSVAR WRDSSHHRDF HRWGSAEFRR PPGHGKQGGW  60
HLFSEESGHG YAGSRSGDKM VEEDSRPSIS RGDGKYGRSG SRENRGSSGP RDWRGHSWEN  120
SNGSQNFSRR PPDVNNDQRS VDDTLAHSSH PHSDFANNSW DQHHLKDQND KMGGFNGTGT  180
GPRCDRENSL GAADWKPLKW TRSGSLSSRA SGFSHTSSSR SMGGADSYEV KAELQPKNAT  240
ASKSHSGEAA TARVTSSAPS EDTTSRKKPR LGWGEGLAKY EKKKVEGPEL SVNKDGPVSS  300
TSNMEPCNVF SPNLVDKSPK LTGFSDCASP ATPSSVACSS SPGVDDKLFS KSANVDSDFS  360
NLTGSPAPGS QNHLQKFSFN LHNLDIYSLN NLGSSIVDLV QSDDPSSVDS GLGRSSAINK  420
LLIWKADISK VLEMTETEID SLENELKSLK SEPGDKCPPA PGSQVVGNNE IFCEDLAGVN  480
KVTRPVPLKI VSSDEPDVEK MPQSNNLHSI HENANEEGID SPGTATSKFV EPLPLIKAVS  540
SCEARGYDNF SADLNARQSA AVKSLVPCTT RRNASVSACG DSNTSMEVKV SLDASSGASL  600
SYSSEDIYNT IISSNKEIAD RAHDAFAKLL PKECCKIDNV GANNGSCTGG LIVEKIAEKK  660
QFARFKERVI ALKFKALHHV WKEDMRLLSM KKCRQKSHKK NELSVRTTYN GNQKNRSSIR  720
SRFTSPAGNH LSMVPTSEII NFTSTLLSES QVKAQRNALK MPALILDEKE KLISKFISSN  780
GLVEDPLAVE KEKAMINPWT SEEREIFLEK FAALGKDFRK IASFLDHKTT ADCVEFYYKN  840
HKSDCFVKLK KEGLCKLGKS FSAKTSLVAS GKKWNREVNA ASLEILSAAS VMADGMSGNK  900
KMRSRSFLLG GYGNVKKSKG EDSFIDRSSS FDIHGDERET AAAADVLAGI CGSLSSEAMS  960
SCITSSVDPV DGNTDRKFLK ANPLCRKPLT PDVTQNVEDE TCSDQSSDEM DLSDWTDDEK  1020
AALLQAVSSF GKDFAKIARC VGTKSQEQCK VFFTKARKCL RLDLMHPIPG NGRSLGNDDA  1080
NGGGSDTDDA CVVETGSAVG TDKSGTKTDE DLPSMNAFHD ESNPVEPRNL SAELNESKEN  1140
NLTAVDLEDI NLISDACAIK VESKLGSDDD SEVVLASPDK SASVSERAAM IMSGSIEGGK  1200
ERANKLGGAE LISAPEVVEL RECNSVPADR LTSEVSLGGL GNKLKTQRVL SPHCFDDRDD  1260
KHEANTGVVE LKSSVQDSST SLNVSLSSVG SSYSGLCFDS ENKHVFVGKP PISALSLKEF  1320
HPTANSLLQN AAADVQSEKA ASQVQLSSTS DIQGIRDMHC HNPISNGDHQ LPLPGNHLMA  1380
SILQGYPLQV PIKKEVNVNM NCSGSED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	5e-17	754	846	2	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	5e-17	754	846	2	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	690	696	KKCRQKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v1839400.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027367112.1	0.0	uncharacterized protein LOC113873262 isoform X1
TrEMBL	A0A371EYZ9	0.0	A0A371EYZ9_MUCPR; Nuclear receptor corepressor 1 (Fragment)
STRING	GLYMA20G31871.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-162	MYB family protein