PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v1839400.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

MYB

Protein Properties

Length: 1406aa MW: 152272 Da PI: 6.4067

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v1839400.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.2	4.5e-09	797	838	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++++ ++ lG++ +++Ia+ + ++t +c+++++k Lj5g3v1839400.1 797 PWTSEEREIFLEKFAALGKD-FRKIASFLD-HKTTADCVEFYYK 838 8***************99.*****.*********98 PP
2	Myb_DNA-binding	31.7	3.5e-10	1013	1054	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT +E l++av +G++ +++Iar++g +++ +qck ++ k Lj5g3v1839400.1 1013 DWTDDEKAALLQAVSSFGKD-FAKIARCVG-TKSQEQCKVFFTK 1054 5***************99.*****.******88766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.35E-13	781	841	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.635	793	844	IPR017884	SANT domain
SMART	SM00717	9.9E-9	794	842	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-6	796	838	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-5	797	838	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.067	1009	1060	IPR017884	SANT domain
SuperFamily	SSF46689	2.99E-10	1009	1060	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-9	1010	1058	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-8	1013	1054	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-7	1013	1054	IPR009057	Homeodomain-like
CDD	cd00167	7.51E-8	1014	1054	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1406 aa Download sequence Send to blast
MPPEPLPWDR KDFFKERKHE RSESVGSVAR WRDSSHHRDF HRWGSAEFRR PPGHGKQGGW 60 HLFSEESGHG YAGSRSGDKM VEEDSRPSIS RGDGKYGRSG SRENRGSSGP RDWRGHSWEN 120 SNGSQNFSRR PPDVNNDQRS VDDTLAHSSH PHSDFANNSW DQHHLKDQND KMGGFNGTGT 180 GPRCDRENSL GAADWKPLKW TRSGSLSSRA SGFSHTSSSR SMGGADSYEV KAELQPKNAT 240 ASKSHSGEAA TARVTSSAPS EDTTSRKKPR LGWGEGLAKY EKKKVEGPEL SVNKDGPVSS 300 TSNMEPCNVF SPNLVDKSPK LTGFSDCASP ATPSSVACSS SPGVDDKLFS KSANVDSDFS 360 NLTGSPAPGS QNHLQKFSFN LHNLDIYSLN NLGSSIVDLV QSDDPSSVDS GLGRSSAINK 420 LLIWKADISK VLEMTETEID SLENELKSLK SEPGDKCPPA PGSQVVGNNE IFCEDLAGVN 480 KVTRPVPLKI VSSDEPDVEK MPQSNNLHSI HENANEEGID SPGTATSKFV EPLPLIKAVS 540 SCEARGYDNF SADLNARQSA AVKSLVPCTT RRNASVSACG DSNTSMEVKV SLDASSGASL 600 SYSSEDIYNT IISSNKEIAD RAHDAFAKLL PKECCKIDNV GANNGSCTGG LIVEKIAEKK 660 QFARFKERVI ALKFKALHHV WKEDMRLLSM KKCRQKSHKK NELSVRTTYN GNQKNRSSIR 720 SRFTSPGNHL SMVPTSEIIN FTSTLLSESQ VKAQRNALKM PALILDEKEK LISKFISSNG 780 LVEDPLAVEK EKAMINPWTS EEREIFLEKF AALGKDFRKI ASFLDHKTTA DCVEFYYKNH 840 KSDCFVKLKK EGLCKLGKSF SAKTSLVASG KKWNREVNAA SLEILSAASV MADGMSGNKK 900 MRSRSFLLGG YGNVKKSKGE DSFIDRSSSF DIHGDERETA AAADVLAGIC GSLSSEAMSS 960 CITSSVDPVD GNTDRKFLKA NPLCRKPLTP DVTQNVEDET CSDQSSDEMD LSDWTDDEKA 1020 ALLQAVSSFG KDFAKIARCV GTKSQEQCKV FFTKARKCLR LDLMHPIPGN GRSLGNDDAN 1080 GGGSDTDDAC VVETGSAVGT DKSGTKTDED LPSMNAFHDE SNPVEPRNLS AELNESKENN 1140 LTAVDLEDIN LISDACAIKV ESKLGSDDDS EVVLASPDKS ASVSERAAMI MSGSIEGGKE 1200 RANKLGGAEL ISAPEVVELR ECNSVPADRL TSEVSLGGLG NKLKTQRVLS PHCFDDRDDK 1260 HEANTGVVEL KSSVQDSSTS LNVSLSSVGS SYSGLCFDSE NKHVFVGKPP ISALSLKEFH 1320 PTANSLLQNA AADVQSEKAA SQVQLSSTSD IQGIRDMHCH NPISNGDHQL PLPGNHLMAS 1380 ILQGYPLQVP IKKEVNVNMN CSGSED

Sequence ? help Back to Top

Protein Sequence Length: 1406 aa Download sequence Send to blast

MPPEPLPWDR KDFFKERKHE RSESVGSVAR WRDSSHHRDF HRWGSAEFRR PPGHGKQGGW  60
HLFSEESGHG YAGSRSGDKM VEEDSRPSIS RGDGKYGRSG SRENRGSSGP RDWRGHSWEN  120
SNGSQNFSRR PPDVNNDQRS VDDTLAHSSH PHSDFANNSW DQHHLKDQND KMGGFNGTGT  180
GPRCDRENSL GAADWKPLKW TRSGSLSSRA SGFSHTSSSR SMGGADSYEV KAELQPKNAT  240
ASKSHSGEAA TARVTSSAPS EDTTSRKKPR LGWGEGLAKY EKKKVEGPEL SVNKDGPVSS  300
TSNMEPCNVF SPNLVDKSPK LTGFSDCASP ATPSSVACSS SPGVDDKLFS KSANVDSDFS  360
NLTGSPAPGS QNHLQKFSFN LHNLDIYSLN NLGSSIVDLV QSDDPSSVDS GLGRSSAINK  420
LLIWKADISK VLEMTETEID SLENELKSLK SEPGDKCPPA PGSQVVGNNE IFCEDLAGVN  480
KVTRPVPLKI VSSDEPDVEK MPQSNNLHSI HENANEEGID SPGTATSKFV EPLPLIKAVS  540
SCEARGYDNF SADLNARQSA AVKSLVPCTT RRNASVSACG DSNTSMEVKV SLDASSGASL  600
SYSSEDIYNT IISSNKEIAD RAHDAFAKLL PKECCKIDNV GANNGSCTGG LIVEKIAEKK  660
QFARFKERVI ALKFKALHHV WKEDMRLLSM KKCRQKSHKK NELSVRTTYN GNQKNRSSIR  720
SRFTSPGNHL SMVPTSEIIN FTSTLLSESQ VKAQRNALKM PALILDEKEK LISKFISSNG  780
LVEDPLAVEK EKAMINPWTS EEREIFLEKF AALGKDFRKI ASFLDHKTTA DCVEFYYKNH  840
KSDCFVKLKK EGLCKLGKSF SAKTSLVASG KKWNREVNAA SLEILSAASV MADGMSGNKK  900
MRSRSFLLGG YGNVKKSKGE DSFIDRSSSF DIHGDERETA AAADVLAGIC GSLSSEAMSS  960
CITSSVDPVD GNTDRKFLKA NPLCRKPLTP DVTQNVEDET CSDQSSDEMD LSDWTDDEKA  1020
ALLQAVSSFG KDFAKIARCV GTKSQEQCKV FFTKARKCLR LDLMHPIPGN GRSLGNDDAN  1080
GGGSDTDDAC VVETGSAVGT DKSGTKTDED LPSMNAFHDE SNPVEPRNLS AELNESKENN  1140
LTAVDLEDIN LISDACAIKV ESKLGSDDDS EVVLASPDKS ASVSERAAMI MSGSIEGGKE  1200
RANKLGGAEL ISAPEVVELR ECNSVPADRL TSEVSLGGLG NKLKTQRVLS PHCFDDRDDK  1260
HEANTGVVEL KSSVQDSSTS LNVSLSSVGS SYSGLCFDSE NKHVFVGKPP ISALSLKEFH  1320
PTANSLLQNA AADVQSEKAA SQVQLSSTSD IQGIRDMHCH NPISNGDHQL PLPGNHLMAS  1380
ILQGYPLQVP IKKEVNVNMN CSGSED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	5e-17	753	845	2	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	5e-17	753	845	2	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	690	696	KKCRQKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v1839400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027367113.1	0.0	uncharacterized protein LOC113873262 isoform X2
TrEMBL	A0A371EYZ9	0.0	A0A371EYZ9_MUCPR; Nuclear receptor corepressor 1 (Fragment)
STRING	GLYMA20G31871.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-161	MYB family protein