PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1793440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 368aa MW: 40973.7 Da PI: 8.6413 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.2 | 0.00017 | 268 | 302 | 16 | 55 |
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +++ L++++ + +K + a++L +A+ YIk Lq Lj5g3v1793440.1 268 LADKITALQQIVSPF-----GKTDTASVLFEAIGYIKFLQ 302 678999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.718 | 252 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-8 | 267 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.65E-5 | 267 | 306 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-9 | 267 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MASAMFEPAC DYLKKLDTSW DYSGSTSFNS FEKHLNGFSE ALIENNERLT KLSNLVSTWS 60 IAPPEPEVSS HQLDPQTNNM SLNSSMDHHH YPQPFGDSSS CSIEGVNSKD SSGMFPFYDQ 120 EMKVKQEYHH ASEAVLGKSF NANGYQNGLN SLSVGDNSGK FYHGFPNLSP CTRNSSDVIS 180 FNNRLGRPVN VGIHAQRPNM KYSNLSESKK QGLQTPSQMR TNNGRGEGTI REVKKKRSEE 240 SSEAISKKPK QDTSTASSSK VQAPKVKLAD KITALQQIVS PFGKTDTASV LFEAIGYIKF 300 LQEQVQLLSN PYLKTNLHKD PRGSFDRKDK EDAKLDLRSK GLCLVPTSCT PVVYRENTGP 360 DYWTPAYR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.7544 | 1e-80 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1793440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006423 | 0.0 | AP006423.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT23C14, TM0311, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027367477.1 | 0.0 | transcription factor bHLH111 | ||||
TrEMBL | A0A0L9TYW0 | 0.0 | A0A0L9TYW0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SNW3 | 0.0 | A0A0S3SNW3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007143772.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10116 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31050.1 | 3e-46 | bHLH family protein |