PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj5g3v1698970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 474aa MW: 52812.3 Da PI: 6.8535 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.4 | 5.6e-53 | 50 | 177 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l+pGfrFhPtdeelv +yLk+kv gk++++ ++i+evdiyk+ePwdL +++k++++ewyfFs dkky +g r nrat++gyWkatg+d++v Lj5g3v1698970.1 50 LAPGFRFHPTDEELVIYYLKRKVCGKNFRF-DAISEVDIYKSEPWDLAdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATSQGYWKATGNDRPV 142 579**************************9.99**************75348899999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vglkktLvf++grap+g++t+Wvmheyr+ Lj5g3v1698970.1 143 RH-GQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRI 177 **.999****************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-61 | 41 | 205 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.144 | 50 | 204 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-27 | 52 | 177 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 474 aa Download sequence Send to blast |
MGRETQLILA PPTTTTTTTV EPQPPPPPPP LAAPSASASA AAVAAPPTSL APGFRFHPTD 60 EELVIYYLKR KVCGKNFRFD AISEVDIYKS EPWDLADKSR LKTRDQEWYF FSALDKKYGN 120 GGRMNRATSQ GYWKATGNDR PVRHGQRTVG LKKTLVFHSG RAPDGKRTNW VMHEYRIVEE 180 ELERVGTGSS QPQDAYVLCR VFHKNNIGPP NGQRYAPFIE EEWDDDASGL VPGVEPVGDG 240 SVARHARVEG NGVSCSEGRN DVVQDTQSIN KAPFDVTNLP IETQNLIAVC KRAKMDEFPS 300 PEKDDSKQMQ MDEYPSSQTD NPKPFSQIYK RRRYNLNSNH SHASGDSVQT NQGPCSSTIT 360 TAATTLPTTT TTEAATNPAP KKHFLSALVE YSLLESLESK ESPVSIKPED LDAAHPTCTK 420 FLKQMQSEMQ KLSVEKETMR FELMSTQTMI KILQSRNDVL TKENEELKRM MGNP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-48 | 49 | 206 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-48 | 49 | 206 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-48 | 49 | 206 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-48 | 49 | 206 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-48 | 49 | 206 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 5e-48 | 49 | 206 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 5e-48 | 49 | 206 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 5e-48 | 49 | 206 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 5e-48 | 49 | 206 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 5e-48 | 49 | 206 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 5e-48 | 49 | 206 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 5e-48 | 49 | 206 | 19 | 170 | NAC domain-containing protein 19 |
4dul_A | 5e-48 | 49 | 206 | 16 | 167 | NAC domain-containing protein 19 |
4dul_B | 5e-48 | 49 | 206 | 16 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Lja.13035 | 0.0 | cell culture| protoplast| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj5g3v1698970.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP010523 | 0.0 | AP010523.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT23O16, TM1810, complete sequence. | |||
GenBank | AP010524 | 0.0 | AP010524.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT34P16, TM1824, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014514246.1 | 0.0 | NAC domain-containing protein 7 | ||||
Swissprot | Q9SQY0 | 1e-126 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A1S3V7C4 | 0.0 | A0A1S3V7C4_VIGRR; NAC domain-containing protein 7 | ||||
STRING | XP_004496131.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8189 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10480.1 | 1e-102 | NAC domain containing protein 50 |
Publications ? help Back to Top | |||
---|---|---|---|
|