PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v1697860.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

G2-like

Protein Properties

Length: 307aa MW: 33678.4 Da PI: 6.6481

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v1697860.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.4	3.9e-34	39	93	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl+h+kSHLQkYRl Lj5g3v1697860.1 39 KPRLRWTTDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLYHLKSHLQKYRL 93 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.9E-33	36	94	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.206	36	96	IPR017930	Myb domain
SuperFamily	SSF46689	1.02E-16	39	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-24	39	94	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-8	41	92	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-12	134	178	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MFSRLISPHE GAMVQEDMQG GVNHTHLGDP CLVLTSDPKP RLRWTTDLHE RFVDAVTQLG 60 GPSKATPKAI MRTMNVKGLT LYHLKSHLQK YRLGKQSGKD SDDGGKDASY PLESPGTDNS 120 SPMLPASDAN EGHEVKEALR AQMEVQSKLH LLVEAEKHLQ IRQDAEQRYM AMVERACKML 180 ADQFIGNTIL DSDSQKLQGL ENRAPTSSLV DSLGFCSLPG SMVGGMHVSE VPHILQPQGV 240 DYSTESCLTS LESLRGLALE GSPGGTKKRM LSLDSMVVPL IWSETNMRTQ GFHLAQVNPQ 300 GITRYGM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-19	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v1697860.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014511136.1	0.0	protein PHR1-LIKE 2 isoform X4
Refseq	XP_017437289.1	0.0	PREDICTED: protein PHR1-LIKE 2-like isoform X2
Swissprot	Q94A57	2e-66	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A1S3UYI1	0.0	A0A1S3UYI1_VIGRR; protein PHR1-LIKE 2 isoform X4
STRING	GLYMA10G34050.3	1e-180	(Glycine max)
STRING	XP_007144235.1	1e-180	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-59	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]