PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1665190.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 355aa MW: 38083.9 Da PI: 8.7172 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.5 | 3.5e-11 | 55 | 80 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C +++rtG+C yG+rC+++H++ Lj5g3v1665190.3 55 GVANCVYYMRTGFCGYGGRCRYNHPR 80 7899********************96 PP | |||||||
2 | zf-CCCH | 40.2 | 5.7e-13 | 101 | 125 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++C+F+H++ Lj5g3v1665190.3 101 EPPCQYYLKTGTCKFGASCRFHHPK 125 79*********************96 PP | |||||||
3 | zf-CCCH | 37.7 | 3.5e-12 | 146 | 171 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ Lj5g3v1665190.3 146 GEKECSYYLKTGQCKFGLTCKFHHPQ 171 7899********************97 PP | |||||||
4 | zf-CCCH | 35.5 | 1.7e-11 | 302 | 328 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G C+++H++ Lj5g3v1665190.3 302 PGEPECQYYLRTGDCKFGLACRYHHPR 328 5799*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.075 | 53 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.3E-6 | 53 | 80 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-8 | 55 | 80 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 56 | 82 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 59 | 80 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-6 | 98 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.136 | 98 | 126 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-10 | 101 | 125 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 102 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 103 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.812 | 144 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 144 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 146 | 171 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-6 | 146 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 150 | 170 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-5 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 301 | 329 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-9 | 303 | 328 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 305 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MDLYGRSPAA RNGSNPGNQP EWRSPATDTG LEESMWHLTL GGGGGGGEHY PERPGVANCV 60 YYMRTGFCGY GGRCRYNHPR DRAAVAAAVR ATGEYPERAG EPPCQYYLKT GTCKFGASCR 120 FHHPKHGGGY LSQAPLNVYG YPLRPGEKEC SYYLKTGQCK FGLTCKFHHP QPAGTSMPAS 180 APQFYPQVQS PTVPLPEQYG GASTSLRVAR PPMLPGSYVQ GAYGPVLLSP GVVPFPGWSP 240 YSAPVSPVLS PGAQPAVGAT SLYGVTQLSS PTSAFARPYT PLPSSTGPSG SGPNEQVFPE 300 RPGEPECQYY LRTGDCKFGL ACRYHHPRER VMAQPLLSPI GLPFRPSWSL TSDGT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.22005 | 0.0 | cell culture| protoplast |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1665190.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093745 | 0.0 | BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027937606.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like isoform X1 | ||||
Refseq | XP_027937608.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like isoform X2 | ||||
Swissprot | Q84W91 | 1e-164 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A371ECC3 | 0.0 | A0A371ECC3_MUCPR; Zinc finger CCCH domain-containing protein 32 (Fragment) | ||||
TrEMBL | A0A4D6N3G3 | 0.0 | A0A4D6N3G3_VIGUN; Serine/threonine-protein kinase/endoribonuclease IRE1 | ||||
STRING | GLYMA02G17260.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-156 | C3H family protein |