PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1665190.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 350aa    MW: 37543.3 Da    PI: 8.823
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1665190.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.5e-115580227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     + ++C +++rtG+C yG+rC+++H++
  Lj5g3v1665190.2 55 GVANCVYYMRTGFCGYGGRCRYNHPR 80
                     7899********************96 PP
2zf-CCCH40.25.6e-13101125327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++C+F+H++
  Lj5g3v1665190.2 101 EPPCQYYLKTGTCKFGASCRFHHPK 125
                      79*********************96 PP
3zf-CCCH37.73.5e-12146171227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG+Ck+G +CkF+H++
  Lj5g3v1665190.2 146 GEKECSYYLKTGQCKFGLTCKFHHPQ 171
                      7899********************97 PP
4zf-CCCH35.51.7e-11302328127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++++rtG Ck+G  C+++H++
  Lj5g3v1665190.2 302 PGEPECQYYLRTGDCKFGLACRYHHPR 328
                      5799*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0755381IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-65380IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-85580IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-65682IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-45980IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-698125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.13698126IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10101125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6102126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5103125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812144172IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5144171IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9146171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6146172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4150170IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5301328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709301329IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-9303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5305330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDLYGRSPAA RNGSNPGNQP EWRSPATDTG LEESMWHLTL GGGGGGGEHY PERPGVANCV  60
YYMRTGFCGY GGRCRYNHPR DRAAVAAAVR ATGEYPERAG EPPCQYYLKT GTCKFGASCR  120
FHHPKHGGGY LSQAPLNVYG YPLRPGEKEC SYYLKTGQCK FGLTCKFHHP QPAGTSMPAS  180
APQFYPQVQS PTVPLPEQYG GASTSLRVAR PPMLPGSYVQ GAYGPVLLSP GVVPFPGWSP  240
YSAPVSPVLS PGAQPAVGAT SLYGVTQLSS PTSAFARPYT PLPSSTGPSG SGPNEQVFPE  300
RPGEPECQYY LRTGDCKFGL ACRYHHPRER VMAQPLLSPI GLPFRPGTVH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.220050.0cell culture| protoplast
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1665190.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937450.0BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027937606.10.0zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W911e-165C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A4D6N3G30.0A0A4D6N3G3_VIGUN; Serine/threonine-protein kinase/endoribonuclease IRE1
STRINGGLYMA02G17260.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-157C3H family protein