PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1601810.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 374aa    MW: 42160.8 Da    PI: 4.6259
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1601810.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEde+l+++++  G g+W++ ++  g+ R++k+c++rw +yl
  Lj5g3v1601810.1 14 RGRWTAEEDEILLKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding50.45.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E++ +v++++ +G++ W++Ia++++ gRt++++k++w+++l
  Lj5g3v1601810.1  67 RGNISAQEEDTIVKLHASFGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-22564IPR009057Homeodomain-like
PROSITE profilePS5129417.069961IPR017930Myb domain
SuperFamilySSF466894.77E-2811108IPR009057Homeodomain-like
SMARTSM007175.7E-131363IPR001005SANT/Myb domain
PfamPF002496.1E-151461IPR001005SANT/Myb domain
CDDcd001671.44E-81661No hitNo description
PROSITE profilePS5129424.20162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2465116IPR009057Homeodomain-like
SMARTSM007175.7E-1666114IPR001005SANT/Myb domain
PfamPF002492.2E-1467112IPR001005SANT/Myb domain
CDDcd001671.16E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDEILLKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRTDLKRGNI SAQEEDTIVK LHASFGNRWS LIASHLPGRT DNEIKNYWNS HLSRKIYSFH  120
RVTTTSTTTT IEPRVLMSIP PRPRRGGRTS RRAMKKNKSS YTQTQIRPNK PTVISQPNNE  180
TAVPLPPLLP APSLEKAAGV ADEARSEDLE LTETTDDDDI FLELLEVEGD INGGTGGALR  240
LSEMIESCLV EEGEEGCGVP TLIAENRGDK CNDVEGNEIR WNKNEDKMVS SSSSSSCEDH  300
KESSSSVNLD GGDDNWNWES VMEFNEVDDA WEHKEKLLTW LWNDDDDWES DGNNNLGEMM  360
DPEKQNDVIA WFLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-22121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C8e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1601810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0103950.0AP010395.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjB03D07, BM1847b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027365987.11e-126transcription factor MYB111-like
TrEMBLA0A151SNJ71e-120A0A151SNJ7_CAJCA; Transcription factor MYB12
STRINGGLYMA02G01740.11e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-73myb domain protein 111