PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1562120.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 250aa    MW: 28746.2 Da    PI: 9.1844
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1562120.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-162774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed +l+++++ +G g+W++ ar  g++R +k+c++rw++yl
  Lj5g3v1562120.1 27 KGPWTLDEDTILINYITTHGEGHWNSLARAAGLRRNGKSCRLRWLNYL 74
                     79********************************************97 PP
2Myb_DNA-binding50.54.7e-1680123146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+ l+++++ q+G++ W++Ia++++ gRt++++k++w++
  Lj5g3v1562120.1  80 RGNITLQEQILILELHSQWGNR-WSKIAQHLP-GRTDNEIKNYWRT 123
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-202177IPR009057Homeodomain-like
PROSITE profilePS5129415.6062274IPR017930Myb domain
SuperFamilySSF466898.78E-3024121IPR009057Homeodomain-like
SMARTSM007171.6E-122676IPR001005SANT/Myb domain
PfamPF002491.1E-132774IPR001005SANT/Myb domain
CDDcd001672.11E-82974No hitNo description
PROSITE profilePS5129423.59475129IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2278127IPR009057Homeodomain-like
SMARTSM007172.9E-1479127IPR001005SANT/Myb domain
PfamPF002492.3E-1480123IPR001005SANT/Myb domain
CDDcd001677.44E-1084123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MRSVDPKVKK GVSVTEHKEN DSTSIRKGPW TLDEDTILIN YITTHGEGHW NSLARAAGLR  60
RNGKSCRLRW LNYLRPDVRR GNITLQEQIL ILELHSQWGN RWSKIAQHLP GRTDNEIKNY  120
WRTRVIKQAK QLKCDVNSKK FRDTLRHVWM PRLLERVQTN RTECVKQSNS LSSGSSGAYS  180
DSSSLELHVG SNSDPELLGR DVSVDLRPCF NDQMLEQGKG GGDSLENLWN DESMWFNLQQ  240
FSDGMESTYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22271257104B-MYB
1h8a_C6e-222212122120MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1562120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8635360.0JN863536.1 Lotus japonicus R2R3MYB transcription factor (MYB112) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027367890.11e-106transcription factor JAMYB-like
SwissprotQ10MB42e-78MYB2_ORYSJ; Transcription factor MYB2
TrEMBLI3RSY61e-130I3RSY6_LOTJA; R2R3MYB transcription factor (Fragment)
STRINGAES616081e-101(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.11e-72myb domain protein 108
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]