PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1533330.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 724aa    MW: 77648.5 Da    PI: 6.5874
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1533330.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16465511455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Lj5g3v1533330.1 465 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 511
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.55E-17457515No hitNo description
Gene3DG3DSA:4.10.280.101.0E-20458519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-21458523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349461510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13465511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18467516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MPLYELFRLA RDKLDKEINN TRVAEQPSSP EDDFFELVWE GGQISSQGQS SRSRRSPSSR  60
SLPSHCIPSH SPKGREKDAG IGYGNNTKMG KFGDLDPELN EIPMSVSSRE VGLNQDEELM  120
PWLDYSMDGS LQHEYGSDFL HELSGVTEHD LTASNNYTLL DKRSTGNQVF REPYKNAAES  180
GNVSKGSSAE QVENARPKAN TTQLYPPSLV ASRASEITEN NNTSNMSQNV PYGEIAQIPS  240
SSSDFSSLKV QRQDHVMPPN NGSAVMNFSH FARPAAIVRA NLQNISLKSG SSSARSDSVG  300
VKNKGAASTS FNPPESTLVD SNGECPKELT MHSQKVVAQS KADLKPLLPK SLEQNAVVSK  360
QTEPACKESA VKTDQTSKQV IAENGAKGPT AAERSAEPAV ASSSVCSGNG IDRCSNDPNQ  420
NLKRKSRDTE DSEYHSEDAE EESVGVKKAS AGRGTGSKRS RAAEVHNLSE RRRRDRINEK  480
MRALQELIPN CNKVDKASML DEAIEYLKTL QLQVQMMSMG AGFYMHPMML PGGMQHMHTP  540
HMAPFSPMGV GMHMGLGMGF GMGMPDMNGG SSRFPMIQVP QMHGTHVPVA HMSGPTALHG  600
MARSNSPGFG LPGQGLPMQM PHAPGFPFQG GPLMNSSAPV LHACGPAGLV GTGDSASASG  660
LKDPMPNVDS QVKQSTGSRD TTSQMPPQCE TATVGFEQSA LVHNSGQASL ANDSGAVNGK  720
QGYD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469474ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.9172e-96floral bud| flower| pod
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1533330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027363600.10.0transcription factor PIF3-like
TrEMBLA0A0B2R1U00.0A0A0B2R1U0_GLYSO; Transcription factor PIF3
STRINGGLYMA20G22291.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-70phytochrome interacting factor 3