PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1412990.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 430aa    MW: 46048.9 Da    PI: 6.4345
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1412990.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.83.5e-16223274354
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                      + kr rr+ +NRe+ArrsR+RK+a +  Le+ v +L++eN++L k+ +  ++
  Lj5g3v1412990.2 223 DAKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLKGENSSLLKRFSDVSQ 274
                      679****************************************998877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-13220276No hitNo description
SMARTSM003382.0E-19221285IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.381223277IPR004827Basic-leucine zipper domain
PfamPF001709.3E-15224272IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.62E-12225274No hitNo description
PROSITE patternPS000360228243IPR004827Basic-leucine zipper domain
PfamPF124987.7E-44292419IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MDRVFSVDEI PDHFWSPPIP ATGVDGGSSN MSRSHSEWAF QRFLQEASAA SPPSASSAAD  60
DVAFVEIQGQ HKSSTGVAAA PTPVNGGVLS DGPPNAPVDS DEYRAYLKNK LNEACAAVAM  120
TRGSLVKSQD PATFPDGGSQ PSNPSQLGSQ PTFKGSGPSG NDPSKLQDKE TKVPIVIPSV  180
PTVQKKPIFV IRPSTSGSSR EQSDDDEADG ETDINTDNMD PSDAKRVRRM LSNRESARRS  240
RRRKQAHLTD LETQVSQLKG ENSSLLKRFS DVSQKFNDSA VDNRVLKADV ETLRAKVKMA  300
EETVKRITGL NPMFHAMSEI SSMGMPPFAG SPSDNSVDAA VPVQDNSHHQ QFYRPVSNNP  360
MPRHDLRVNN GLGDISSIEN VQQQNGAAVA GGNKMGQAAA PLQRVASLEH LQKRIRGGVD  420
SCGAPSNGEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237244RRSRRRKQ
2239244SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.150350.0root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1412990.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027365545.10.0light-inducible protein CPRF2-like isoform X2
SwissprotQ990901e-131CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A1S2XWX90.0A0A1S2XWX9_CICAR; light-inducible protein CPRF2-like isoform X1
STRINGXP_004495799.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.29e-77bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]