PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1177040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 20688.3 Da PI: 5.4423 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.8 | 5.2e-22 | 13 | 57 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + rqvtfskRr g++KKA+ELS+LC+ eva+++fs+ +k y + Lj5g3v1177040.1 13 DPNTRQVTFSKRRSGLFKKAHELSILCGSEVAIVVFSPGNKPYSF 57 6678**********************************9998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.604 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-27 | 1 | 71 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.54E-31 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 2.6E-20 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-25 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-20 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-20 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MGRRKIEIAL VKDPNTRQVT FSKRRSGLFK KAHELSILCG SEVAIVVFSP GNKPYSFGHP 60 SVDAVAAKFL DEESNPNDDS QDGSTSDDDS STEVVVDVEE RNLQLADVMA QIHKEEKKAK 120 ELDETLKQLQ EGQELDDLYV EARGMVRKRL DEFEVADSMI LLSQKPVEGI TATKQVARKR 180 RRKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-19 | 1 | 78 | 1 | 77 | MEF2 CHIMERA |
6byy_B | 3e-19 | 1 | 78 | 1 | 77 | MEF2 CHIMERA |
6byy_C | 3e-19 | 1 | 78 | 1 | 77 | MEF2 CHIMERA |
6byy_D | 3e-19 | 1 | 78 | 1 | 77 | MEF2 CHIMERA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 181 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1177040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020221917.1 | 1e-66 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A151T3P0 | 3e-65 | A0A151T3P0_CAJCA; Agamous-like MADS-box protein AGL61 | ||||
STRING | GLYMA05G35820.1 | 8e-64 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 3e-32 | AGAMOUS-like 29 |