PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1050280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 236aa MW: 25995.6 Da PI: 4.828 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.5 | 5.1e-39 | 13 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll+ lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+ Lj5g3v1050280.1 13 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLSYLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFSLQQQVVNLQAQ 106 7*************************89****************************************************************** PP DUF260 94 lallkee 100 la+lke+ Lj5g3v1050280.1 107 LAYLKEQ 113 ***9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.092 | 12 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.4E-37 | 13 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSGSGSSSSS GSPCGACKFL RRKCVRGCVF APYFCHEQGA THFAAIHKVF GASNVSKLLS 60 YLPVSDRCEA AVTISYEAQA RLQDPIYGCV SHIFSLQQQV VNLQAQLAYL KEQAAQTGLN 120 ASSNESPNEK YLEKPNNAFP QDLQSWFQME NSNMGSEFSP NLSNNYAATQ YYGNNTLMDL 180 NPIGNNYQNS GVKDENSSFS SFEECSNSMS YDMQINSRTW GFDEAEDLHS VAFGYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-35 | 6 | 107 | 4 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-35 | 6 | 107 | 4 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1050280.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT137601 | 0.0 | BT137601.1 Lotus japonicus clone JCVI-FLLj-14A20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014513182.2 | 1e-127 | LOB domain-containing protein 29 | ||||
Swissprot | Q9M2J7 | 8e-70 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | I3SAV4 | 1e-175 | I3SAV4_LOTJA; Uncharacterized protein | ||||
STRING | XP_007144924.1 | 1e-122 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3571 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-60 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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