PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1015850.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 349aa MW: 39347.4 Da PI: 10.3598 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.5 | 4.2e-31 | 283 | 341 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++ +tYegeHnh+k Lj5g3v1015850.2 283 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLLVTYEGEHNHPK 341 99***********************9988****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.4E-16 | 234 | 278 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-32 | 269 | 341 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.505 | 276 | 342 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-26 | 279 | 341 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-37 | 281 | 341 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-26 | 283 | 340 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MEEVEQANRA AVESCHRVLN LLSQPRDQVQ HRNLMVETGE AVVRFKKVVS LLHNGLGHAR 60 FRKCKTTPQN PFSQRIFLDN PNCKSNNHHS KSLQFPQTSF PDNSVQELGS STIRNSLSLV 120 NPTLELSSSG KTPLHLTTQQ ASSQHYHFIQ QQQQQQRLML QQQQMKHQAE MMFRRNSSGI 180 NLNFDSTSCT PTMSSTRSFI SSLSIDGSVA NLDGSSFHLI AAPHSSDQNS QQHKRKCSAR 240 GDDSSLKCGS SSRCHCSKKR KHRVKRSIKV PAISNKLANI PPDDYSWRKY GQKPIKGSPH 300 PRGYYKCSSM RGCPARKHVE RCLEEPTMLL VTYEGEHNHP KIPTQPANA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-19 | 277 | 343 | 10 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.15280 | 0.0 | cell culture| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00284 | DAP | Transfer from AT2G30590 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1015850.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010552 | 0.0 | AP010552.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT35C10, TM1849b, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027365339.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-123 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A0B2RD39 | 0.0 | A0A0B2RD39_GLYSO; Putative WRKY transcription factor 21 | ||||
TrEMBL | A0A0R0KWS7 | 0.0 | A0A0R0KWS7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G15920.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 6e-98 | WRKY DNA-binding protein 21 |