PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1015850.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 349aa    MW: 39347.4 Da    PI: 10.3598
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1015850.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31283341360
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                      D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++ +tYegeHnh+k
  Lj5g3v1015850.1 283 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLLVTYEGEHNHPK 341
                      99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.4E-16234278IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-32269341IPR003657WRKY domain
PROSITE profilePS5081129.505276342IPR003657WRKY domain
SuperFamilySSF1182901.03E-26279341IPR003657WRKY domain
SMARTSM007741.2E-37281341IPR003657WRKY domain
PfamPF031061.3E-26283340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEVEQANRA AVESCHRVLN LLSQPRDQVQ HRNLMVETGE AVVRFKKVVS LLHNGLGHAR  60
FRKCKTTPQN PFSQRIFLDN PNCKSNNHHS KSLQFPQTSF PDNSVQELGS STIRNSLSLV  120
NPTLELSSSG KTPLHLTTQQ ASSQHYHFIQ QQQQQQRLML QQQQMKHQAE MMFRRNSSGI  180
NLNFDSTSCT PTMSSTRSFI SSLSIDGSVA NLDGSSFHLI AAPHSSDQNS QQHKRKCSAR  240
GDDSSLKCGS SSRCHCSKKR KHRVKRSIKV PAISNKLANI PPDDYSWRKY GQKPIKGSPH  300
PRGYYKCSSM RGCPARKHVE RCLEEPTMLL VTYEGEHNHP KIPTQPANA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-192773431075WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.152800.0cell culture| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1015850.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105520.0AP010552.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT35C10, TM1849b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027365339.10.0probable WRKY transcription factor 21
SwissprotO043361e-123WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0B2RD390.0A0A0B2RD39_GLYSO; Putative WRKY transcription factor 21
TrEMBLA0A0R0KWS70.0A0A0R0KWS7_SOYBN; Uncharacterized protein
STRINGGLYMA02G15920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.16e-98WRKY DNA-binding protein 21