PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v0921030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 257aa MW: 27007.1 Da PI: 10.6668 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.6 | 6.8e-06 | 34 | 58 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k e+C f+ t C++G+ C+F H Lj5g3v0921030.1 34 KLEPCTKFFSTAGCPFGEACHFRHH 58 779*******************885 PP | |||||||
2 | zf-CCCH | 37.8 | 3.2e-12 | 224 | 248 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC++fa+ G C yG+rC+FaHg Lj5g3v0921030.1 224 FKTKLCQNFAK-GSCAYGERCHFAHG 248 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.54 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.371 | 32 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 33 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-7 | 34 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-4 | 34 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.21E-15 | 108 | 188 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 3.2E-11 | 118 | 188 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.571 | 119 | 183 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 5.7E-16 | 119 | 187 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.28E-13 | 123 | 183 | No hit | No description |
Pfam | PF00013 | 1.2E-11 | 123 | 185 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-15 | 221 | 254 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-8 | 222 | 253 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-7 | 223 | 249 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.408 | 223 | 250 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-9 | 224 | 248 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDFRKRGRSE VAVNGAIKKT KQEMESLSTG VGSKLEPCTK FFSTAGCPFG EACHFRHHVP 60 GGYKVVEQML NKNSIVATSQ SSRNVVAPPV LNGSTVGTGG GMGGRLIAPP GLASSFGASS 120 KAKISVKASL AGAIIGKGGE NSKQICYQTG AKLSIREHES DPNLRNIELV GSFEQIENAS 180 NMVRELILTG SMLAPPKSAP AVRGAPPKSA PAVRGAPTPL RSNFKTKLCQ NFAKGSCAYG 240 ERCHFAHGAA NLRKLRL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v0921030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095873 | 9e-46 | BT095873.1 Soybean clone JCVI-FLGm-20C9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027365832.1 | 1e-113 | zinc finger CCCH domain-containing protein 36-like isoform X3 | ||||
Swissprot | Q9C7C3 | 3e-81 | C3H36_ARATH; Zinc finger CCCH domain-containing protein 36 | ||||
Swissprot | Q9FG30 | 3e-81 | C3H52_ARATH; Zinc finger CCCH domain-containing protein 52 | ||||
TrEMBL | A0A0B2R2B2 | 1e-101 | A0A0B2R2B2_GLYSO; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | I1N979 | 1e-101 | I1N979_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G32910.1 | 1e-102 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 6e-73 | C3H family protein |
Publications ? help Back to Top | |||
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