PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v0866920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HB-other | ||||||||
Protein Properties | Length: 72aa MW: 8292.44 Da PI: 9.9477 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.1 | 3e-08 | 13 | 72 | 6 | 53 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRa 53 +ft++++ e+e+ ++ n p ++ + LA+k ++ +qV +WFqN+R+ Lj5g3v0866920.1 13 RFTQNEVAEMEAILQEhnNAMPARDVLAVLAEKFsespdrkgkiTVQMKQVWNWFQNKRY 72 69*************766999*********************99999************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.84E-11 | 3 | 72 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-8 | 10 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.426 | 13 | 72 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-5 | 13 | 72 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
MGRPPSNGGP AFRFTQNEVA EMEAILQEHN NAMPARDVLA VLAEKFSESP DRKGKITVQM 60 KQVWNWFQNK RY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.3071 | 1e-120 | cell culture| floral bud| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v0866920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT134334 | 1e-117 | BT134334.1 Lotus japonicus clone JCVI-FLLj-21B7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028755542.1 | 3e-43 | protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2 | ||||
Swissprot | Q8RWJ7 | 3e-34 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | I3S1I7 | 4e-46 | I3S1I7_LOTJA; Uncharacterized protein | ||||
STRING | AET03010 | 4e-41 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20948 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.2 | 1e-36 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |