PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0614980.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 213aa    MW: 24082.5 Da    PI: 10.6143
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0614980.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00127496123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ Fs+   L  H  +H
  Lj5g3v0614980.1 74 FECKTCNRKFSSFQALGGHRASH 96
                     89**********99999998887 PP
2zf-C2H213.30.00024120142123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C++Cg+ Fs    L  H+r+H
  Lj5g3v0614980.1 120 HACSICGQEFSLGQALGGHMRRH 142
                      67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.32574101IPR007087Zinc finger, C2H2
SuperFamilySSF576671.56E-874142No hitNo description
SMARTSM003550.197496IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-117498IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4118144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.679120147IPR007087Zinc finger, C2H2
SMARTSM003550.16120142IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-8120144IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MLVSSLPHQT NTFQLTHSTT TSKNFTAMTM INNNNKRQRD QTQQNNKESI DLATSLMLLS  60
RTQTQTQTKP HTEFECKTCN RKFSSFQALG GHRASHKKPK LTGEEELKFS AAKPSKPKMH  120
ACSICGQEFS LGQALGGHMR RHRGDFNEEQ GFRFSSIKHS EKISEAVKST PVLKRSNSKR  180
VMCLQMDLNL TPLENDLKIL FGNKAPRVDL ALF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0614980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1350420.0BT135042.1 Lotus japonicus clone JCVI-FLLj-13P15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235351.22e-71C2H2-type zinc finger protein
RefseqXP_028196476.12e-71zinc finger protein ZAT11-like
SwissprotQ9SLD48e-47ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLI3S3J51e-134I3S3J5_LOTJA; Uncharacterized protein
STRINGGLYMA13G19570.18e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-49C2H2 family protein