PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0550200.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 311aa    MW: 35000.1 Da    PI: 8.0319
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0550200.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.76.3e-25134191259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgy+WrK Gq++ kg+ +pr Y+ Ct+agCpv+k ver+ ++ k v++tY+g+Hnhe
  Lj5g3v0550200.2 134 DDGYRWRKSGQRPSKGNLMPRRYFMCTTAGCPVRKTVERNLHNLKNVITTYKGRHNHE 191
                      8********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-26121193IPR003657WRKY domain
PROSITE profilePS5081129.103128193IPR003657WRKY domain
SuperFamilySSF1182907.85E-22130193IPR003657WRKY domain
SMARTSM007743.6E-22133192IPR003657WRKY domain
PfamPF031063.4E-19134191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MLMGDNVVQI LLAPTERHAT KYSNDQYNDE KQVNLTIHEI KKGKMPMYCY KEAGAKVDEG  60
RPVTENLQLG GKSNKNKVTQ GSTSPSKEVD VAVVAHDSGS KRKSLDYYNK ALLRLIHPLP  120
KVEVQVESIV DVPDDGYRWR KSGQRPSKGN LMPRRYFMCT TAGCPVRKTV ERNLHNLKNV  180
ITTYKGRHNH EVPLEKHKDC SINVDDFHKA ANSLRTVAMS GNANIRGPEA NQEDENDFLR  240
LTLGQNFNND HVNVRSSSTN HIPGPEANQE DDNDFLRLTL GQNFNIDHVN VRSSSTNQIP  300
SINLEKDGDD I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-22124193877Probable WRKY transcription factor 4
2lex_A1e-22124193877Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0550200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.17e-29WRKY DNA-binding protein 33